Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30426 | Canola | nucleus | 58.33 | 67.84 |
| AT3G28230.2 | Thale cress | nucleus | 32.95 | 50.0 |
| CDY23387 | Canola | nucleus | 29.17 | 39.69 |
| CDX83470 | Canola | nucleus | 52.27 | 21.2 |
| CDY44246 | Canola | nucleus | 47.73 | 18.78 |
| CDX93614 | Canola | nucleus | 14.02 | 11.86 |
| CDX95119 | Canola | plastid | 13.64 | 9.63 |
| CDX93612 | Canola | cytosol | 6.44 | 4.04 |
| CDX95118 | Canola | nucleus, peroxisome, plasma membrane, plastid | 6.44 | 3.17 |
Protein Annotations
| EnsemblPlants:CDY23385 | EnsemblPlantsGene:GSBRNA2T00021989001 | InterPro:Sas10_C_dom | PANTHER:PTHR13237 | PANTHER:PTHR13237:SF8 | PFAM:PF09368 |
| ProteinID:CDY23385 | ProteinID:CDY23385.1 | SEG:seg | UniParc:UPI0004EE8C1C | UniProt:A0A078GAB6 | MapMan:35.2 |
Description
BnaC04g49130DBnaC04g49130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GAB6]
Coordinates
chrLK032143:+:239935..241215
Molecular Weight (calculated)
29747.6 Da
IEP (calculated)
10.856
GRAVY (calculated)
-1.144
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSKVGLPKR GSVSTKTRKE IDEHEIELPP ESLATSIADG TVQNVVKEDA TSLPPVKINK STRKKGDKRK HQQNDQVDVQ SEEMLKLRAA LQGKLRSNGV
101: FGSTVSKSDK AQKRHKLAKR RKIELKVLAG AGVKSEEDRR NETEVFESQG SEDEFYKQVK QKKEAKRAAK AEIYSRESSS NLLLLPESVE GKRLISKEIL
201: SNRGLTRHRN KDKKNPRKNY RDKYTDKVKR RGGQVREIRK PSGPYGGEGL GINPNISHSI RIKN
101: FGSTVSKSDK AQKRHKLAKR RKIELKVLAG AGVKSEEDRR NETEVFESQG SEDEFYKQVK QKKEAKRAAK AEIYSRESSS NLLLLPESVE GKRLISKEIL
201: SNRGLTRHRN KDKKNPRKNY RDKYTDKVKR RGGQVREIRK PSGPYGGEGL GINPNISHSI RIKN
001: MGKKGGTLKR SSKSTKTRKD IVEDQYDDEI DAFHKQRDIV PLDVNDDTDE SDEDDVQPVF DLQGVDDESE EDEDTEDEEE AENGLTAKMI RQKKYLRAKF
101: GDGDDEMADD DKDKEEDKRS TWGGRSGLYH SGDNVDFDIL SSDDEDIKAE EEEVIRLRAE QLGSITAADA GLDDDSEEDS DRELTMEEIS DKGKQATKSI
201: TDKKEKGDKD THVEEIKKDI NSLSKEEQMD VVYSSAPEIV GLLSELNDAV EELESKINPV MNKLKEGEIS LNGLARYLEV KQLLLLTYCQ SITFYLLLKS
301: EGQPIRDHPV LARLVEIKSL LDKIKELDEE LPPGFEESLA RSIANGAVQK VVKEDQLTSP VSDSVDRITQ DTAKPMKIDN AREEKKKKGE KRKHQNDLVD
401: VQSEEMLKLR AALEGKLRTN GVLGSTVSKS DKAQKRQKLA NRKLETFDDY VDDADNSTHN VTADKLTKLV STKRKPKTIS GDDDLPQRDD IGERRRKFEL
501: RVLAGAGVKS SEGDGRNKNG AFASDDEDDN DGDNNDMVDN DGESEDEFYK QVKQKQQAKR AAKAEIYSRK PHLMPSSPEH VDGKRHISNQ MVSNRGLTRQ
601: RNRDLKNPRK KYRKNYEKKV TRRKGQVRDI RKQTGPYAGE ARGINPNTSR SIRM
101: GDGDDEMADD DKDKEEDKRS TWGGRSGLYH SGDNVDFDIL SSDDEDIKAE EEEVIRLRAE QLGSITAADA GLDDDSEEDS DRELTMEEIS DKGKQATKSI
201: TDKKEKGDKD THVEEIKKDI NSLSKEEQMD VVYSSAPEIV GLLSELNDAV EELESKINPV MNKLKEGEIS LNGLARYLEV KQLLLLTYCQ SITFYLLLKS
301: EGQPIRDHPV LARLVEIKSL LDKIKELDEE LPPGFEESLA RSIANGAVQK VVKEDQLTSP VSDSVDRITQ DTAKPMKIDN AREEKKKKGE KRKHQNDLVD
401: VQSEEMLKLR AALEGKLRTN GVLGSTVSKS DKAQKRQKLA NRKLETFDDY VDDADNSTHN VTADKLTKLV STKRKPKTIS GDDDLPQRDD IGERRRKFEL
501: RVLAGAGVKS SEGDGRNKNG AFASDDEDDN DGDNNDMVDN DGESEDEFYK QVKQKQQAKR AAKAEIYSRK PHLMPSSPEH VDGKRHISNQ MVSNRGLTRQ
601: RNRDLKNPRK KYRKNYEKKV TRRKGQVRDI RKQTGPYAGE ARGINPNTSR SIRM
Arabidopsis Description
EMB2777Sas10/U3 ribonucleoprotein (Utp) family protein [Source:UniProtKB/TrEMBL;Acc:Q8L3P4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.