Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d032213_P001 | Maize | nucleus | 77.3 | 81.02 |
EES15038 | Sorghum | nucleus | 83.24 | 78.57 |
Os08t0432800-01 | Rice | nucleus | 59.73 | 64.06 |
GSMUA_Achr6P30610_001 | Banana | nucleus | 31.35 | 60.73 |
Zm00001d005740_P001 | Maize | nucleus | 56.76 | 60.34 |
GSMUA_Achr7P07280_001 | Banana | nucleus | 30.54 | 58.55 |
Solyc04g006990.2.1 | Tomato | nucleus | 31.08 | 54.5 |
Bra025158.1-P | Field mustard | nucleus | 31.35 | 52.02 |
PGSC0003DMT400019294 | Potato | nucleus | 32.43 | 45.98 |
VIT_01s0011g02940.t01 | Wine grape | nucleus | 41.89 | 44.41 |
Solyc05g009880.2.1 | Tomato | nucleus | 35.95 | 44.33 |
PGSC0003DMT400002155 | Potato | nucleus | 36.49 | 43.27 |
Zm00001d028504_P001 | Maize | nucleus | 42.43 | 40.15 |
CDX99756 | Canola | nucleus | 35.95 | 39.94 |
KRH70619 | Soybean | nucleus | 40.0 | 39.78 |
CDY13580 | Canola | nucleus | 35.68 | 39.4 |
Bra026510.1-P | Field mustard | nucleus | 35.68 | 39.4 |
KRG92013 | Soybean | nucleus | 36.76 | 39.19 |
CDX83546 | Canola | nucleus | 35.41 | 39.1 |
KRH34774 | Soybean | nucleus | 37.3 | 39.09 |
KRH75497 | Soybean | nucleus | 39.46 | 38.83 |
CDY07364 | Canola | nucleus | 36.76 | 38.53 |
Bra004015.1-P | Field mustard | nucleus | 36.76 | 38.53 |
CDX95989 | Canola | nucleus | 35.95 | 37.68 |
CDY33592 | Canola | nucleus | 35.95 | 37.57 |
Bra004338.1-P | Field mustard | nucleus | 35.95 | 37.57 |
Zm00001d034596_P001 | Maize | nucleus | 23.24 | 37.55 |
AT3G25710.1 | Thale cress | nucleus | 34.86 | 37.5 |
AT1G68810.1 | Thale cress | nucleus | 37.3 | 37.5 |
CDY04259 | Canola | nucleus | 35.68 | 37.29 |
Zm00001d005919_P001 | Maize | nucleus | 21.08 | 36.45 |
Zm00001d020763_P001 | Maize | nucleus | 21.62 | 35.09 |
Zm00001d047878_P001 | Maize | nucleus | 39.46 | 34.19 |
Zm00001d031818_P001 | Maize | nucleus | 19.73 | 30.54 |
Zm00001d039764_P001 | Maize | nucleus | 19.19 | 27.2 |
Zm00001d037528_P001 | Maize | plastid | 17.84 | 24.26 |
Protein Annotations
EntrezGene:103653468 | MapMan:15.5.32 | Gene3D:4.10.280.10 | UniProt:A0A1D6Q1G9 | ProteinID:AQK52460.1 | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF98 |
SMART:SM00353 | SUPFAM:SSF47459 | SUPFAM:SSF55021 | UniParc:UPI0004DEC981 | EnsemblPlantsGene:Zm00001d050394 | EnsemblPlants:Zm00001d050394_P001 |
EnsemblPlants:Zm00001d050394_T001 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
bHLH-transcription factor 40Putative HLH DNA-binding domain superfamily protein
Coordinates
chr4:-:85655816..85658613
Molecular Weight (calculated)
37810.2 Da
IEP (calculated)
5.397
GRAVY (calculated)
-0.310
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MWEGGGFHGS HEALLLQAAG SGAADYGHGA GPALLPWLGP AAGAAPGFSY MAPHHAQPGP SGAEAAASPF GFGGGGYSDG GVGGQFGVFG GPETALPAPH
101: GLAAAAGGGT SAMQHGSRMV SGLLGTLQME LGRMAAKEIM DAKALAASRS HSEAERRRRQ RINSHLARLR SLLPNTSKTD KASLLAEVIE HVKELKRQTS
201: AVLDVEGEEA AAARQRLQLL PTEADDLAVD ATEDGEGRLV VRASLCCEDR AGLIPDIARA LAALRLRAHR AEIATLGGRV RNVLLITAAA DDDDGEGEGD
301: DDDDDVEGDG GCAGGNASSS RRHELVASIQ EALRGVMDCK TASSDTSSSS NGGGSMKRQR MSGAHEQGSL
101: GLAAAAGGGT SAMQHGSRMV SGLLGTLQME LGRMAAKEIM DAKALAASRS HSEAERRRRQ RINSHLARLR SLLPNTSKTD KASLLAEVIE HVKELKRQTS
201: AVLDVEGEEA AAARQRLQLL PTEADDLAVD ATEDGEGRLV VRASLCCEDR AGLIPDIARA LAALRLRAHR AEIATLGGRV RNVLLITAAA DDDDGEGEGD
301: DDDDDVEGDG GCAGGNASSS RRHELVASIQ EALRGVMDCK TASSDTSSSS NGGGSMKRQR MSGAHEQGSL
001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR
Arabidopsis Description
BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.