Factsheet for Zm00001d031818_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14023	Sorghum	nucleus	81.17	79.51
TraesCS2B01G494900.1	Wheat	nucleus	60.67	68.72
TraesCS2A01G472300.1	Wheat	nucleus	59.41	67.62
TraesCS2D01G472000.1	Wheat	nucleus	60.25	66.36
Os08t0477900-00	Rice	nucleus	60.67	65.02
Zm00001d005919_P001	Maize	nucleus	54.39	60.75
Zm00001d020763_P001	Maize	nucleus	56.07	58.77
GSMUA_Achr3P06780_001	Banana	cytosol	47.28	55.12
GSMUA_Achr9P15140_001	Banana	plastid	46.03	47.83
VIT_18s0001g07410.t01	Wine grape	nucleus	35.15	38.01
KRH16843	Soybean	cytosol	34.73	34.58
PGSC0003DMT400060615	Potato	cytosol	30.54	32.59
CDX90384	Canola	cytosol	22.18	32.52
KRH72457	Soybean	nucleus	34.31	32.28
PGSC0003DMT400024185	Potato	nucleus	25.94	30.39
Solyc04g076240.1.1	Tomato	nucleus	25.52	29.76
Zm00001d034596_P001	Maize	nucleus	26.36	27.51
Solyc04g014360.2.1	Tomato	nucleus	29.71	26.2
Zm00001d039764_P001	Maize	nucleus	28.03	25.67
Bra010635.1-P	Field mustard	plastid	23.85	25.45
KRH69661	Soybean	mitochondrion	21.76	24.53
Zm00001d037528_P001	Maize	plastid	27.62	24.26
AT4G38070.1	Thale cress	plastid	23.85	22.27
Zm00001d005740_P001	Maize	nucleus	31.8	21.84
Zm00001d032213_P001	Maize	nucleus	30.54	20.68
Zm00001d050394_P001	Maize	nucleus	30.54	19.73
Zm00001d028504_P001	Maize	nucleus	32.22	19.69
Zm00001d047878_P001	Maize	nucleus	29.71	16.63
CDY52514	Canola	cytosol	23.85	3.96

Protein Annotations

EntrezGene:103643157	MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A1D6KLE8	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	ProteinID:ONM03715.1
PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF120	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI000221DDC2	EnsemblPlantsGene:Zm00001d031818	EnsemblPlants:Zm00001d031818_P001	EnsemblPlants:Zm00001d031818_T001	InterPro:bHLH_dom	SEG:seg

Description

bHLH-transcription factor 170Transcription factor bHLH51

Coordinates

chr1:+:202899615..202900464

Molecular Weight (calculated)

25350.0 Da

IEP (calculated)

8.780

GRAVY (calculated)

-0.436

Length

239 amino acids

Sequence
(BLAST)

001: MVATDGEGER STPAPAPAPA LRKERGRSHS EAERKRRQRI NAHLATLRTL VPSASRMDKA ALLGEVVRYV RELREKASDA AAGVGLGVIP GEGDEVGVEE
101: EDGCRWRPAG RHHGAGGIGT DADVSQPPPR RVRAWVCCDD RPGLLSDLGR AVRSVSNACP VRVEIATVGG RTRSVLELEV CDDGDDGSAT AAGNGRAVAL
201: STLRAAMRAV LLNRDEHVVA AAGEGYKRPR FSAQIARVQ

Best Arabidopsis Sequence Match ( AT3G56770.1 )
(BLAST)

001: MQPEVSDQIF YAFLTGGLCA SSTSTTVTSS SDPFATVYED KALASLRNHK EAERKRRARI NSHLNKLRKL LSCNSKTDKS TLLAKVVQRV KELKQQTLEI
101: TDETIPSETD EISVLNIEDC SRGDDRRIIF KVSFCCEDRP ELLKDLMETL KSLQMETLFA DMTTVGGRTR NVLVVAADKE HHGVQSVNFL QNALKSLLER
201: SSKSVMVGHG GGGGEERLKR RRALDHIIMV

Arabidopsis Description

BHLH107Putative transcription factor bHLH107 [Source:UniProtKB/Swiss-Prot;Acc:Q9LET0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.