Factsheet for PGSC0003DMT400060615

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g014360.2.1	Tomato	nucleus	91.52	75.65
CDX90384	Canola	cytosol	29.91	41.1
TraesCS5A01G245600.1	Wheat	nucleus	31.7	36.79
GSMUA_Achr3P06780_001	Banana	cytosol	32.59	35.61
TraesCS2B01G494900.1	Wheat	nucleus	32.14	34.12
TraesCS5B01G243000.1	Wheat	nucleus	31.25	33.49
HORVU5Hr1G069580.1	Barley	nucleus	31.25	33.33
TraesCS2A01G472300.1	Wheat	nucleus	31.25	33.33
PGSC0003DMT400024185	Potato	nucleus	30.36	33.33
TraesCS5D01G252300.1	Wheat	nucleus	30.8	33.01
Zm00001d005919_P001	Maize	nucleus	31.25	32.71
KRH69661	Soybean	mitochondrion	30.8	32.55
TraesCS2D01G472000.1	Wheat	nucleus	31.25	32.26
GSMUA_Achr9P15140_001	Banana	plastid	33.04	32.17
Os08t0477900-00	Rice	nucleus	31.7	31.84
EER96881	Sorghum	cytosol, nucleus, peroxisome, plastid	31.25	31.11
Zm00001d031818_P001	Maize	nucleus	32.59	30.54
Bra010635.1-P	Field mustard	plastid	30.36	30.36
PGSC0003DMT400019294	Potato	nucleus	35.27	30.27
Zm00001d020763_P001	Maize	nucleus	30.8	30.26
EES14023	Sorghum	nucleus	32.59	29.92
PGSC0003DMT400026449	Potato	mitochondrion	29.91	28.51
PGSC0003DMT400052622	Potato	nucleus	31.7	27.84
PGSC0003DMT400071293	Potato	nucleus	27.68	27.68
PGSC0003DMT400021599	Potato	nucleus	32.14	27.48
PGSC0003DMT400040448	Potato	nucleus	27.23	27.11
AT4G38070.1	Thale cress	plastid	30.36	26.56
PGSC0003DMT400002155	Potato	nucleus	34.82	25.0
CDY52514	Canola	cytosol	29.46	4.59

Protein Annotations

EnsemblPlants:PGSC0003DMT400060615	EnsemblPlantsGene:PGSC0003DMG400023577	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF201	PFAM:PF00010	PFscan:PS50888	PGSC:PGSC0003DMG400023577	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000296196C	UniProt:M1C662	MapMan:15.5.32	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023577]

Coordinates

chr4:-:8239709..8242403

Molecular Weight (calculated)

25032.1 Da

IEP (calculated)

7.735

GRAVY (calculated)

-0.568

Length

224 amino acids

Sequence
(BLAST)

001: MAEAKAIAAN KSHSEAERRR RKRINGHLAT LRNLLPNTIK TDKASLLAEA VRCVRELKQT TSELGAMSEN DDDDDHTTLM TKLMFPSESD ELNLSYCNDS
101: NNNNTDNNNN SEYDGAIIIK ASMCCEDRPE IMMELRRALS TVEGKIVRAE MSTVGGRIKC ILWLEMLENG CKEGLLVQLR RALKVVMDKA NFGPQNMGQD
201: LLGNNKRPRL VGGPMNYVCK NGQL

Best Arabidopsis Sequence Match ( AT1G68810.1 )
(BLAST)

001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR

Arabidopsis Description

BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.