Factsheet for PGSC0003DMT400026449

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g076920.2.1	Tomato	cytosol, nucleus, plastid	91.06	89.17
VIT_14s0068g01580.t01	Wine grape	nucleus	51.06	45.63
VIT_10s0003g01160.t01	Wine grape	nucleus	30.21	44.65
KRH50172	Soybean	nucleus	49.79	42.86
GSMUA_Achr7P10740_001	Banana	nucleus	45.53	42.63
KRH71297	Soybean	nucleus	47.66	41.33
GSMUA_Achr3P03510_001	Banana	nucleus	41.7	40.66
GSMUA_Achr2P20040_001	Banana	nucleus	42.55	40.16
PGSC0003DMT400052622	Potato	nucleus	42.98	39.61
GSMUA_Achr10P...	Banana	nucleus	42.98	39.45
Os01t0218100-01	Rice	nucleus	40.85	35.96
TraesCS3A01G142900.1	Wheat	nucleus	37.87	34.23
HORVU3Hr1G027630.3	Barley	nucleus	36.6	34.13
TraesCS3D01G144700.1	Wheat	nucleus	37.02	34.12
KXG31555	Sorghum	nucleus	39.15	34.07
PGSC0003DMT400071293	Potato	nucleus	29.79	31.25
PGSC0003DMT400060615	Potato	cytosol	28.51	29.91
PGSC0003DMT400040448	Potato	nucleus	27.23	28.44
PGSC0003DMT400019294	Potato	nucleus	31.49	28.35
PGSC0003DMT400002155	Potato	nucleus	34.89	26.28
PGSC0003DMT400021599	Potato	nucleus	28.94	25.95
PGSC0003DMT400024185	Potato	nucleus	21.7	25.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400026449	EnsemblPlantsGene:PGSC0003DMG400010208	EntrezGene:102594182	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF82	PFAM:PF00010	PFscan:PS50888	PGSC:PGSC0003DMG400010208	RefSeq:XP_006362421.1
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002968A61	UniProt:M1AN65	MapMan:15.5.32	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010208]

Coordinates

chr2:+:32274139..32277147

Molecular Weight (calculated)

26276.6 Da

IEP (calculated)

8.482

GRAVY (calculated)

-0.241

Length

235 amino acids

Sequence
(BLAST)

001: MNLGEFCENE AKGVVQSLVL DSEKSELVKA SGRVEKKIGK SEGKTIAALK SHSEAERRRR QRINAHLSTL RNLVPSSDKM DKAALLAEVV CQVKRLKETA
101: TNVSERFFIP LDSDEIKVEI IAENAIDGTC LYRASICCEY RPHLLSDLKE TINSLHVNLV KSEISTLGSR VKNVFLFTNL IDGGRANTEA REIFLSSVRQ
201: AFSCILDKVS AFPEYSAYPN KRQRISCFES SSLLF

Best Arabidopsis Sequence Match ( AT1G68810.1 )
(BLAST)

001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR

Arabidopsis Description

BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.