Factsheet for PGSC0003DMT400024185

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g076240.1.1	Tomato	nucleus	95.59	95.12
VIT_18s0001g07410.t01	Wine grape	nucleus	43.63	40.27
KRH72457	Soybean	nucleus	45.1	36.22
KRH16843	Soybean	cytosol	42.16	35.83
GSMUA_Achr3P06780_001	Banana	cytosol	31.37	31.22
TraesCS5A01G245600.1	Wheat	nucleus	29.41	31.09
PGSC0003DMT400060615	Potato	cytosol	33.33	30.36
TraesCS5D01G252300.1	Wheat	nucleus	29.41	28.71
TraesCS5B01G243000.1	Wheat	nucleus	29.41	28.71
HORVU5Hr1G069580.1	Barley	nucleus	29.41	28.57
Zm00001d005919_P001	Maize	nucleus	29.9	28.5
GSMUA_Achr9P15140_001	Banana	plastid	31.86	28.26
Os08t0477900-00	Rice	nucleus	30.88	28.25
TraesCS2A01G472300.1	Wheat	nucleus	28.92	28.1
TraesCS2B01G494900.1	Wheat	nucleus	28.92	27.96
Zm00001d020763_P001	Maize	nucleus	30.39	27.19
TraesCS2D01G472000.1	Wheat	nucleus	28.92	27.19
EER96881	Sorghum	cytosol, nucleus, peroxisome, plastid	29.9	27.11
Zm00001d031818_P001	Maize	nucleus	30.39	25.94
EES14023	Sorghum	nucleus	30.88	25.82
PGSC0003DMT400019294	Potato	nucleus	31.37	24.52
PGSC0003DMT400071293	Potato	nucleus	25.49	23.21
PGSC0003DMT400021599	Potato	nucleus	28.92	22.52
PGSC0003DMT400052622	Potato	nucleus	27.45	21.96
PGSC0003DMT400026449	Potato	mitochondrion	25.0	21.7
PGSC0003DMT400040448	Potato	nucleus	23.53	21.33
PGSC0003DMT400002155	Potato	nucleus	28.92	18.91

Protein Annotations

EntrezGene:102605892	MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M1AJM0
PFAM:PF00010	EnsemblPlantsGene:PGSC0003DMG400009347	PGSC:PGSC0003DMG400009347	EnsemblPlants:PGSC0003DMT400024185	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF307	SMART:SM00353	SUPFAM:SSF47459	SUPFAM:SSF55021	UniParc:UPI000296BB07	RefSeq:XP_006338133.1
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009347]

Coordinates

chr4:-:64918145..64920001

Molecular Weight (calculated)

22751.7 Da

IEP (calculated)

10.586

GRAVY (calculated)

-0.491

Length

204 amino acids

Sequence
(BLAST)

001: MLSSLQGCNG FLQLVDHQKN EKSNTTKKSK SKDAAVTHAV AERKRRERIN SHLHTLKKLF PYLPKKDKPR VLTEAVTQLK ELRKNVAQQL ELSSLFIPSE
101: NDVVIINYCD NINEERTIKA TICCEDRPSL NRDLSSAIRS VQGRVIKAEM ATVGGRTKAE LVVVLGKANG GEKDIGQLKR ALKAVVEKRD LGFGSNVMLG
201: RRFG

Best Arabidopsis Sequence Match ( AT3G56770.1 )
(BLAST)

001: MQPEVSDQIF YAFLTGGLCA SSTSTTVTSS SDPFATVYED KALASLRNHK EAERKRRARI NSHLNKLRKL LSCNSKTDKS TLLAKVVQRV KELKQQTLEI
101: TDETIPSETD EISVLNIEDC SRGDDRRIIF KVSFCCEDRP ELLKDLMETL KSLQMETLFA DMTTVGGRTR NVLVVAADKE HHGVQSVNFL QNALKSLLER
201: SSKSVMVGHG GGGGEERLKR RRALDHIIMV

Arabidopsis Description

BHLH107Putative transcription factor bHLH107 [Source:UniProtKB/Swiss-Prot;Acc:Q9LET0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.