Factsheet for TraesCS5D01G252300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G245600.1	Wheat	nucleus	89.95	97.41
TraesCS5B01G243000.1	Wheat	nucleus	97.13	97.13
HORVU5Hr1G069580.1	Barley	nucleus	94.74	94.29
Zm00001d020763_P001	Maize	nucleus	71.29	65.35
Zm00001d005919_P001	Maize	nucleus	66.51	64.95
EER96881	Sorghum	cytosol, nucleus, peroxisome, plastid	69.38	64.44
TraesCS2D01G472000.1	Wheat	nucleus	58.85	56.68
GSMUA_Achr3P06780_001	Banana	cytosol	53.11	54.15
GSMUA_Achr9P15140_001	Banana	plastid	54.55	49.57
VIT_18s0001g07410.t01	Wine grape	nucleus	37.8	35.75
KRH16843	Soybean	cytosol	40.19	35.0
CDX90384	Canola	cytosol	25.84	33.13
KRH72457	Soybean	nucleus	40.19	33.07
PGSC0003DMT400060615	Potato	cytosol	33.01	30.8
TraesCS1D01G112000.1	Wheat	plastid	30.62	30.33
TraesCS3D01G104800.1	Wheat	cytosol	24.88	29.89
PGSC0003DMT400024185	Potato	nucleus	28.71	29.41
Solyc04g076240.1.1	Tomato	nucleus	27.75	28.29
TraesCS3D01G144700.1	Wheat	nucleus	33.97	27.84
Solyc04g014360.2.1	Tomato	nucleus	34.45	26.57
KRH69661	Soybean	mitochondrion	26.32	25.94
Bra010635.1-P	Field mustard	plastid	27.27	25.45
TraesCS5D01G479100.1	Wheat	nucleus	30.14	25.1
TraesCS3D01G105100.2	Wheat	mitochondrion, nucleus	32.06	23.93
TraesCS5D01G237300.1	Wheat	nucleus	37.8	23.44
AT4G38070.1	Thale cress	plastid	27.75	22.66
TraesCS4D01G217700.1	Wheat	nucleus	36.36	18.72
CDY52514	Canola	cytosol	27.27	3.96

Protein Annotations

EnsemblPlants:TraesCS5D01G252300.1	EnsemblPlantsGene:TraesCS5D01G252300	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF185	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:358010268..358010974

Molecular Weight (calculated)

22497.7 Da

IEP (calculated)

8.520

GRAVY (calculated)

-0.415

Length

209 amino acids

Sequence
(BLAST)

001: MVLPTRSGEP EEAEAEMDDQ RSPPVRGART SRSHSEAERK RRQRINTHLA TLRSLLPSAS QMDKAALLGE VVRHVRELRG DADGGAVAGV AVPGESDEVG
101: VEEERWDARE SAKRVRAWVC CADRPGLMSE LGRAVRSVSA RAVRAEIATV GGRTRSVLEL EAGQAAGASR PALHAALRAV LLTREDQLLA VEGYKRQCFS
201: ALISQGLGS

Best Arabidopsis Sequence Match ( AT4G38070.1 )
(BLAST)

001: MVLLHHVSLS HYQNSSSLFS SSSESILCLF LVLCVMQLEQ GMRPISRCYN PTAYSTTMGR SFFAGAATSS KLFSRGFSVT KPKSKTESKE VAAKKHSDAE
101: RRRRLRINSQ FATLRTILPN LVKQDKASVL GETVRYFNEL KKMVQDIPTT PSLEDNLRLD HCNNNRDLAR VVFSCSDREG LMSEVAESMK AVKAKAVRAE
201: IMTVGGRTKC ALFVQGVNGN EGLVKLKKSL KLVVNGKSSS EAKNNNNGGS LLIQQQ

Arabidopsis Description

BHLH131Transcription factor bHLH131 [Source:UniProtKB/Swiss-Prot;Acc:P0CB25]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.