Factsheet for TraesCS3D01G105100.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G102900.1	Wheat	nucleus, plastid	81.07	91.53
TraesCS3B01G120500.1	Wheat	nucleus	81.07	87.98
TraesCS3D01G104800.1	Wheat	cytosol	53.21	85.63
TraesCS3B01G120200.1	Wheat	nucleus, plastid	76.79	83.66
HORVU3Hr1G018680.1	Barley	nucleus	72.86	76.12
EES00272	Sorghum	plastid	59.29	68.59
Zm00001d039764_P001	Maize	nucleus	56.43	60.54
TraesCS1D01G112000.1	Wheat	plastid	43.21	57.35
GSMUA_Achr5P29390_001	Banana	nucleus	35.0	42.06
Solyc03g095980.2.1	Tomato	nucleus	28.21	37.8
PGSC0003DMT400071293	Potato	nucleus	30.0	37.5
KRG97707	Soybean	nucleus	33.93	34.55
KRH31167	Soybean	nucleus	33.57	33.57
PGSC0003DMT400040448	Potato	nucleus	26.79	33.33
KRH14931	Soybean	nucleus, plastid	31.07	32.95
Solyc06g051260.2.1	Tomato	nucleus	26.07	32.44
TraesCS2D01G472000.1	Wheat	nucleus	25.0	32.26
TraesCS5D01G252300.1	Wheat	nucleus	23.93	32.06
CDY07066	Canola	nucleus, plastid	28.57	31.62
CDX93211	Canola	nucleus, plastid	28.57	31.62
Bra017024.1-P	Field mustard	nucleus, plastid	28.21	31.23
AT2G40200.1	Thale cress	nucleus	28.21	31.1
TraesCS3D01G144700.1	Wheat	nucleus	28.21	30.98
KRH73206	Soybean	golgi, nucleus	32.5	30.95
CDY24921	Canola	nucleus	24.64	28.75
CDY07615	Canola	nucleus	23.57	28.33
Bra000177.1-P	Field mustard	nucleus	23.57	28.33
TraesCS5D01G479100.1	Wheat	nucleus	25.36	28.29
VIT_13s0067g01350.t01	Wine grape	nucleus	29.64	27.95
TraesCS5D01G237300.1	Wheat	nucleus	26.43	21.96
TraesCS4D01G217700.1	Wheat	nucleus	27.5	18.97

Protein Annotations

EnsemblPlants:TraesCS3D01G105100.2	EnsemblPlantsGene:TraesCS3D01G105100	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF190	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	TIGR:cd04873	TMHMM:TMhelix	MapMan:15.5.32	:	:

Description

No Description!

Coordinates

chr3D:+:57335248..57336519

Molecular Weight (calculated)

30430.6 Da

IEP (calculated)

8.769

GRAVY (calculated)

-0.213

Length

280 amino acids

Sequence
(BLAST)

001: MKRMRVSKSW MAAPCQSPHG GNELMAYDAC DPTVSGGPAL VTRQASSAPP AGPLELSTTS SSTTGSGRTA TEARALKVHS EAERRRRVRI NAHLTALRRM
101: IPDTKQMDKA ALLGRVVDQV RHLKRRASEV AQQTPAVPPE TDEVSVEFCC TGDADDDNSR LYIKASVSCD DRPDLVAGLI QALHGLRLRT LRAEVSSLGG
201: TVQHVFTLCK EEEGSAGSAG LNSLKEAVRL ALAKVASPEL VCGGSPFQFQ SKRQRILELH YSIMSIWMSI FWSIFLVCQI

Best Arabidopsis Sequence Match ( AT2G40200.1 )
(BLAST)

001: MENSYDSSKW SDSTTPYMVS WSLQSESSDS DWNRFNLGFS SSSFGGNFPA DDCVGGIEKA ESLSRSHRLA EKRRRDRINS HLTALRKLVP NSDKLDKAAL
101: LATVIEQVKE LKQKAAESPI FQDLPTEADE VTVQPETISD FESNTNTIIF KASFCCEDQP EAISEIIRVL TKLQLETIQA EIISVGGRMR INFILKDSNC
201: NETTNIAASA KALKQSLCSA LNRITSSSTT TSSVCRIRSK RQRWFLSSHY SHNE

Arabidopsis Description

BHLH51Transcription factor bHLH51 [Source:UniProtKB/Swiss-Prot;Acc:Q9XEF0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.