Factsheet for TraesCS2B01G494900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G472300.1	Wheat	nucleus	92.89	93.33
TraesCS2D01G472000.1	Wheat	nucleus	93.36	90.78
Os08t0477900-00	Rice	nucleus	77.25	73.09
Zm00001d031818_P001	Maize	nucleus	68.72	60.67
TraesCS5B01G243000.1	Wheat	nucleus	59.72	60.29
EES14023	Sorghum	nucleus	68.25	59.02
GSMUA_Achr3P06780_001	Banana	cytosol	49.29	50.73
GSMUA_Achr9P15140_001	Banana	plastid	49.76	45.65
VIT_18s0001g07410.t01	Wine grape	nucleus	39.81	38.01
CDX90384	Canola	cytosol	26.54	34.36
KRH16843	Soybean	cytosol	37.44	32.92
PGSC0003DMT400060615	Potato	cytosol	34.12	32.14
KRH72457	Soybean	nucleus	37.91	31.5
TraesCS1B01G129200.1	Wheat	plastid	30.33	30.19
PGSC0003DMT400024185	Potato	nucleus	27.96	28.92
Solyc04g076240.1.1	Tomato	nucleus	27.49	28.29
TraesCS3B01G120200.1	Wheat	nucleus, plastid	33.18	27.24
TraesCS3B01G120500.1	Wheat	nucleus	33.18	27.13
Solyc04g014360.2.1	Tomato	nucleus	33.65	26.2
TraesCS5B01G478000.1	Wheat	nucleus	30.81	25.9
Bra010635.1-P	Field mustard	plastid	27.49	25.89
KRH69661	Soybean	mitochondrion	25.12	25.0
TraesCS5B01G229000.1	Wheat	nucleus	36.49	23.05
AT4G38070.1	Thale cress	plastid	27.96	23.05
TraesCS4B01G217400.1	Wheat	nucleus	34.6	17.98
CDY52514	Canola	cytosol	27.49	4.03

Protein Annotations

EnsemblPlants:TraesCS2B01G494900.1	EnsemblPlantsGene:TraesCS2B01G494900	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF120	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	:	:	:	:

Description

No Description!

Coordinates

chr2B:-:691810019..691810779

Molecular Weight (calculated)

22948.2 Da

IEP (calculated)

8.671

GRAVY (calculated)

-0.431

Length

211 amino acids

Sequence
(BLAST)

001: MATDGECSTP GKGATVRSHS EAERKRRQRI NAHLATLRTL VPSASRMDKA ALLGEVVRHV RELQGRANDA TEGVVDVVPG ETDEVGVEED DYLLNAGPTD
101: NEPRWRRRVR AWVCCADRPG LMSDLGRAVR SVGSARPVRA EIATVGGRTR SVLELEHVCH EAGPANDRAV ALSTLRAALR TVLFNREELL ATAAAVDGYK
201: RPRLSPVQQL S

Best Arabidopsis Sequence Match ( AT3G56770.1 )
(BLAST)

001: MQPEVSDQIF YAFLTGGLCA SSTSTTVTSS SDPFATVYED KALASLRNHK EAERKRRARI NSHLNKLRKL LSCNSKTDKS TLLAKVVQRV KELKQQTLEI
101: TDETIPSETD EISVLNIEDC SRGDDRRIIF KVSFCCEDRP ELLKDLMETL KSLQMETLFA DMTTVGGRTR NVLVVAADKE HHGVQSVNFL QNALKSLLER
201: SSKSVMVGHG GGGGEERLKR RRALDHIIMV

Arabidopsis Description

BHLH107Putative transcription factor bHLH107 [Source:UniProtKB/Swiss-Prot;Acc:Q9LET0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.