CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031818_P001	Maize	nucleus	79.51	81.17
TraesCS2A01G472300.1	Wheat	nucleus	59.43	69.05
TraesCS2B01G494900.1	Wheat	nucleus	59.02	68.25
Os08t0477900-00	Rice	nucleus	61.07	66.82
TraesCS2D01G472000.1	Wheat	nucleus	59.02	66.36
EER96881	Sorghum	cytosol, nucleus, peroxisome, plastid	54.51	59.11
GSMUA_Achr3P06780_001	Banana	cytosol	45.49	54.15
GSMUA_Achr9P15140_001	Banana	plastid	45.49	48.26
VIT_18s0001g07410.t01	Wine grape	nucleus	34.84	38.46
KRH16843	Soybean	cytosol	33.2	33.75
PGSC0003DMT400060615	Potato	cytosol	29.92	32.59
CDX90384	Canola	cytosol	21.31	31.9
KRH72457	Soybean	nucleus	32.79	31.5
PGSC0003DMT400024185	Potato	nucleus	25.82	30.88
Solyc04g076240.1.1	Tomato	nucleus	25.41	30.24
EES19097	Sorghum	nucleus, plastid	27.46	29.13
EES00272	Sorghum	plastid	27.46	27.69
Solyc04g014360.2.1	Tomato	nucleus	29.1	26.2
KXG31555	Sorghum	nucleus	28.69	25.93
KRH69661	Soybean	mitochondrion	21.72	25.0
EER93220	Sorghum	nucleus	26.64	24.34
Bra010635.1-P	Field mustard	plastid	22.13	24.11
EER98886	Sorghum	nucleus	32.79	22.66
AT4G38070.1	Thale cress	plastid	22.95	21.88
EES15038	Sorghum	nucleus	31.15	19.39
OQU92884	Sorghum	nucleus	32.38	17.75
CDY52514	Canola	cytosol	22.13	3.75

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:8083560	UniProt:C5YMN0	EnsemblPlants:EES14023	ProteinID:EES14023
ProteinID:EES14023.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF120
SMART:SM00353	EnsemblPlantsGene:SORBI_3007G159300	SUPFAM:SSF47459	UniParc:UPI0001A87ADF	RefSeq:XP_002444528.1	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:59389601..59391465

Molecular Weight (calculated)

26333.0 Da

IEP (calculated)

8.757

GRAVY (calculated)

-0.535

Length

244 amino acids

Sequence
(BLAST)

001: MVVTDDGVVE GRGLAEGERL TPALRKKERG RSHSEAERKR RQRINAHLAT LRTLVPSASR MDKAALLGEV VRHVRELRAK ASDAAAGVGV GVIPGEGDEV
101: GAEEEDDDYW RQHGRRHFGA DDDDSLPPPR RVVRAWVCCD DRPGLLSDLG RAVRSVRNAR PVRVEIATVG GRTRSVLELD VSGDDGDDDN AATAAAAGNG
201: RAVALSTLRA AMRAVLLNRD EHVIAAGDGY KRPRFSSAQI AKVQ

Best Arabidopsis Sequence Match ( AT3G25710.1 )
(BLAST)

001: MYAMKEEDCL QTFHNLQDYQ DQFHLHHHPQ ILPWSSTSLP SFDPLHFPSN PTRYSDPVHY FNRRASSSSS SFDYNDGFVS PPPSMDHPQN HLRILSEALG
101: PIMRRGSSFG FDGEIMGKLS AQEVMDAKAL AASKSHSEAE RRRRERINTH LAKLRSILPN TTKTDKASLL AEVIQHMKEL KRQTSQITDT YQVPTECDDL
201: TVDSSYNDEE GNLVIRASFC CQDRTDLMHD VINALKSLRL RTLKAEIATV GGRVKNILFL SREYDDEEDH DSYRRNFDGD DVEDYDEERM MNNRVSSIEE
301: ALKAVIEKCV HNNDESNDNN NLEKSSSGGI KRQRTSKMVN RCYN

Arabidopsis Description

BHLH32Transcription factor AIG1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS08]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.