CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91265
EER95307
EER97871
EES05120
EES07517
EES12026
KXG23810
OQU91413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68810.1	EER91265	AT4G26630.1	25387881
AT1G68810.1	OQU91413	AT4G26630.1	25387881
AT3G25710.1	EER95307	AT1G49850.1	21798944
AT3G25710.1	KXG23810	AT1G49850.1	21798944
AT3G25710.1	EER97871	AT3G06430.1	21798944
AT3G25710.1	EES07517	AT3G48150.1	21798944
AT3G25710.1	EES05120	AT3G48550.1	21798944
AT3G25710.1	EES12026	AT3G48550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050394_P001	Maize	nucleus	78.57	83.24
Zm00001d032213_P001	Maize	nucleus	74.23	82.44
Os08t0432800-01	Rice	nucleus	54.85	62.32
GSMUA_Achr6P30610_001	Banana	nucleus	29.85	61.26
GSMUA_Achr7P07280_001	Banana	nucleus	29.34	59.59
EER98886	Sorghum	nucleus	52.55	58.36
Solyc04g006990.2.1	Tomato	nucleus	29.08	54.03
Bra025158.1-P	Field mustard	nucleus	29.59	52.02
VIT_01s0011g02940.t01	Wine grape	nucleus	41.33	46.42
PGSC0003DMT400019294	Potato	nucleus	30.87	46.36
Solyc05g009880.2.1	Tomato	nucleus	34.95	45.67
PGSC0003DMT400002155	Potato	nucleus	35.2	44.23
KRH70619	Soybean	nucleus	40.31	42.47
KRG92013	Soybean	nucleus	36.99	41.79
KRH34774	Soybean	nucleus	37.5	41.64
KRH75497	Soybean	nucleus	39.54	41.22
CDX99756	Canola	nucleus	33.93	39.94
CDY13580	Canola	nucleus	33.93	39.7
CDX83546	Canola	nucleus	33.67	39.4
Bra026510.1-P	Field mustard	nucleus	33.67	39.4
CDX95989	Canola	nucleus	35.2	39.09
Bra004338.1-P	Field mustard	nucleus	35.2	38.98
CDY33592	Canola	nucleus	35.2	38.98
AT1G68810.1	Thale cress	nucleus	36.48	38.86
Bra004015.1-P	Field mustard	nucleus	34.69	38.53
CDY07364	Canola	nucleus	34.69	38.53
AT3G25710.1	Thale cress	nucleus	33.42	38.08
CDY04259	Canola	nucleus	33.67	37.29
OQU92884	Sorghum	nucleus	41.84	36.85
EER96881	Sorghum	cytosol, nucleus, peroxisome, plastid	20.15	35.11
EER93220	Sorghum	nucleus	23.47	34.46
KXG31555	Sorghum	nucleus	22.45	32.59
EES14023	Sorghum	nucleus	19.39	31.15
EES00272	Sorghum	plastid	18.62	30.17
EES19097	Sorghum	nucleus, plastid	16.58	28.26

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:8075663	UniProt:C5YL75	EnsemblPlants:EES15038	ProteinID:EES15038
ProteinID:EES15038.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF98
SMART:SM00353	EnsemblPlantsGene:SORBI_3007G135900	SUPFAM:SSF47459	SUPFAM:SSF55021	UniParc:UPI0001A87B83	RefSeq:XP_002445543.1
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:56232000..56234938

Molecular Weight (calculated)

40777.7 Da

IEP (calculated)

5.402

GRAVY (calculated)

-0.426

Length

392 amino acids

Sequence
(BLAST)

001: MWEGGGIHGS HHEALLLQAA GSGAADYGHG GGGVPASLLP PWLGPAAAPG GFSSYAMAPH HAHHLQPGPL GGAAESSFGF GDGGGGYSEE GGVGQFGVFG
101: PETPLPLLPP HGLQALAAGG SSGGTATALM PHGPRMVSGL LGTLQAELGR MTAKEIMDAK ALAASRSHSE AERRRRQRIN SHLARLRSLL PNTTKTDKAS
201: LLAEVIEHVK ELKRQTSAVL DGEGEEEEEP AAARQHLLLP TEADDLAVDA AEDGDGRLVV RASLCCEDRV GLIPDIARAL AALRLRAHRA EIATLGGRVR
301: NVLLITTAAD DDQEEEEEEE EGGERQGDND REDCAGASLS NHRRHELVAS IQEALRGVMD RKTASSDTSS SSGGGGSIKR QRMNGAHEQG SL

Best Arabidopsis Sequence Match ( AT1G68810.1 )
(BLAST)

001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR

Arabidopsis Description

BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.