Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026510.1-P | Field mustard | nucleus | 98.2 | 97.61 |
| AT3G25710.1 | Thale cress | nucleus | 86.79 | 84.01 |
| CDX83546 | Canola | nucleus | 84.38 | 83.88 |
| CDY13580 | Canola | nucleus | 84.38 | 83.88 |
| Solyc04g006990.2.1 | Tomato | nucleus | 40.84 | 64.45 |
| GSMUA_Achr6P30610_001 | Banana | nucleus | 36.94 | 64.4 |
| GSMUA_Achr7P07280_001 | Banana | nucleus | 34.83 | 60.1 |
| GSMUA_Achr11P... | Banana | nucleus | 34.53 | 57.79 |
| GSMUA_Achr1P21280_001 | Banana | nucleus | 33.93 | 56.78 |
| PGSC0003DMT400019294 | Potato | nucleus | 42.04 | 53.64 |
| Solyc05g009880.2.1 | Tomato | nucleus | 47.15 | 52.33 |
| PGSC0003DMT400002155 | Potato | nucleus | 47.45 | 50.64 |
| VIT_01s0011g02940.t01 | Wine grape | nucleus | 52.85 | 50.43 |
| KRG92013 | Soybean | nucleus | 49.25 | 47.26 |
| KRH34774 | Soybean | nucleus | 48.95 | 46.18 |
| CDX95989 | Canola | nucleus | 47.45 | 44.76 |
| CDY33592 | Canola | nucleus | 47.45 | 44.63 |
| CDY07364 | Canola | nucleus | 47.15 | 44.48 |
| CDY04259 | Canola | nucleus | 46.85 | 44.07 |
| KRH75497 | Soybean | nucleus | 49.25 | 43.62 |
| KRH70619 | Soybean | nucleus | 48.35 | 43.28 |
| CDX90384 | Canola | cytosol | 19.22 | 39.26 |
| TraesCS5B01G229000.1 | Wheat | nucleus | 38.44 | 38.32 |
| TraesCS5D01G237300.1 | Wheat | nucleus | 38.44 | 37.98 |
| Os08t0432800-01 | Rice | nucleus | 39.04 | 37.68 |
| TraesCS5A01G230500.1 | Wheat | nucleus | 37.84 | 37.61 |
| HORVU4Hr1G061760.1 | Barley | nucleus | 44.14 | 36.57 |
| Zm00001d032213_P001 | Maize | nucleus | 38.74 | 36.54 |
| TraesCS4D01G217700.1 | Wheat | nucleus | 44.44 | 36.45 |
| TraesCS4B01G217400.1 | Wheat | nucleus | 44.14 | 36.21 |
| TraesCS4A01G087000.1 | Wheat | nucleus | 44.14 | 36.21 |
| Zm00001d050394_P001 | Maize | nucleus | 39.94 | 35.95 |
| Os09t0410700-00 | Rice | nucleus | 39.04 | 35.81 |
| Zm00001d028504_P001 | Maize | nucleus | 41.74 | 35.55 |
| EER98886 | Sorghum | nucleus | 37.24 | 35.13 |
| Zm00001d005740_P001 | Maize | nucleus | 36.64 | 35.06 |
| CDY57584 | Canola | nucleus | 26.73 | 35.04 |
| CDY06944 | Canola | nucleus | 26.73 | 35.04 |
| Os03t0260600-01 | Rice | nucleus | 42.94 | 34.96 |
| HORVU5Hr1G066530.2 | Barley | cytosol, nucleus | 38.14 | 34.6 |
| EES15038 | Sorghum | nucleus | 39.94 | 33.93 |
| CDY23874 | Canola | nucleus | 24.02 | 33.76 |
| CDY22504 | Canola | nucleus | 24.02 | 32.92 |
| CDX79957 | Canola | nucleus | 24.62 | 32.8 |
| OQU92884 | Sorghum | nucleus | 43.54 | 32.58 |
| Zm00001d047878_P001 | Maize | nucleus | 41.14 | 32.08 |
| CDY07066 | Canola | nucleus, plastid | 23.42 | 30.83 |
| CDX93211 | Canola | nucleus, plastid | 23.42 | 30.83 |
| CDX76011 | Canola | nucleus | 21.32 | 30.6 |
| CDY24921 | Canola | nucleus | 21.62 | 30.0 |
| CDY07615 | Canola | nucleus | 20.72 | 29.61 |
| CDY52514 | Canola | cytosol | 21.32 | 4.93 |
Protein Annotations
| EnsemblPlants:CDX99756 | EnsemblPlantsGene:GSBRNA2T00108409001 | Gene3D:4.10.280.10 | GO:A0A078EF72 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF77 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:CDX99756 | ProteinID:CDX99756.1 |
| SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EBDC96 | MapMan:15.5.32 | : |
Description
BnaC02g35640D
Coordinates
chrLK031913:-:880484..882221
Molecular Weight (calculated)
38203.7 Da
IEP (calculated)
6.565
GRAVY (calculated)
-0.788
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MYAMKEEDCL QNFHNLQDYQ DQFLLHHHPQ ILPWSSLPSF DPTYFPSNPT RYPDSVPHFN RRASSSSSFD YTDGFVSPPS MDHHHHPNHL RVLSEALGPI
101: MRRGSSFGFD DEIMGKLSAQ EVMDAKALAA SKSHSEAERR RRERINTHLA KLRSILPNTT KTDKASLLAE VIQHMKELKR QTSLITDTSQ IPTECDDLTV
201: DSAYNDEEGN LMIRVSFCCE DRTELMHDII NALKSLRLRI HKAEIATVGG RVKNVLFLSR EDDDEYRRNF DGVDVDNDDE EKRFNRASSI KEALKAVIDK
301: CVNNNDDNNN LDKSSSGSIK RQRTSKMVNR CYN
101: MRRGSSFGFD DEIMGKLSAQ EVMDAKALAA SKSHSEAERR RRERINTHLA KLRSILPNTT KTDKASLLAE VIQHMKELKR QTSLITDTSQ IPTECDDLTV
201: DSAYNDEEGN LMIRVSFCCE DRTELMHDII NALKSLRLRI HKAEIATVGG RVKNVLFLSR EDDDEYRRNF DGVDVDNDDE EKRFNRASSI KEALKAVIDK
301: CVNNNDDNNN LDKSSSGSIK RQRTSKMVNR CYN
001: MYAMKEEDCL QTFHNLQDYQ DQFHLHHHPQ ILPWSSTSLP SFDPLHFPSN PTRYSDPVHY FNRRASSSSS SFDYNDGFVS PPPSMDHPQN HLRILSEALG
101: PIMRRGSSFG FDGEIMGKLS AQEVMDAKAL AASKSHSEAE RRRRERINTH LAKLRSILPN TTKTDKASLL AEVIQHMKEL KRQTSQITDT YQVPTECDDL
201: TVDSSYNDEE GNLVIRASFC CQDRTDLMHD VINALKSLRL RTLKAEIATV GGRVKNILFL SREYDDEEDH DSYRRNFDGD DVEDYDEERM MNNRVSSIEE
301: ALKAVIEKCV HNNDESNDNN NLEKSSSGGI KRQRTSKMVN RCYN
101: PIMRRGSSFG FDGEIMGKLS AQEVMDAKAL AASKSHSEAE RRRRERINTH LAKLRSILPN TTKTDKASLL AEVIQHMKEL KRQTSQITDT YQVPTECDDL
201: TVDSSYNDEE GNLVIRASFC CQDRTDLMHD VINALKSLRL RTLKAEIATV GGRVKNILFL SREYDDEEDH DSYRRNFDGD DVEDYDEERM MNNRVSSIEE
301: ALKAVIEKCV HNNDESNDNN NLEKSSSGGI KRQRTSKMVN RCYN
Arabidopsis Description
BHLH32Transcription factor AIG1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS08]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.