CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68463
CDY05264
CDY16531
CDY20854
CDY24692
CDY32837
CDY36901
CDY44976
CDY58069
CDY58070
CDY60454
CDY61552
CDY70544
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25710.1	CDY16531	AT1G49850.1	21798944
AT3G25710.1	CDY20854	AT1G49850.1	21798944
AT3G25710.1	CDY32837	AT1G49850.1	21798944
AT3G25710.1	CDY61552	AT1G49850.1	21798944
AT3G25710.1	CDY05264	AT3G06430.1	21798944
AT3G25710.1	CDY24692	AT3G06430.1	21798944
AT3G25710.1	CDY36901	AT3G48150.1	21798944
AT3G25710.1	CDY44976	AT3G48150.1	21798944
AT3G25710.1	CDY58069	AT3G48150.1	21798944
AT3G25710.1	CDY58070	AT3G48150.1	21798944
AT3G25710.1	CDY70805	AT3G48150.1	21798944
AT3G25710.1	CDX68463	AT3G48550.1	21798944
AT3G25710.1	CDY60454	AT3G48550.1	21798944
AT3G25710.1	CDY70544	AT3G48550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025158.1-P	Field mustard	nucleus	66.57	100.0
CDX83546	Canola	nucleus	98.51	98.51
CDX99756	Canola	nucleus	83.88	84.38
AT3G25710.1	Thale cress	nucleus	86.57	84.3
GSMUA_Achr6P30610_001	Banana	nucleus	36.42	63.87
Solyc04g006990.2.1	Tomato	nucleus	39.4	62.56
GSMUA_Achr7P07280_001	Banana	nucleus	34.93	60.62
GSMUA_Achr11P...	Banana	nucleus	35.82	60.3
GSMUA_Achr1P21280_001	Banana	nucleus	34.03	57.29
Solyc05g009880.2.1	Tomato	nucleus	47.16	52.67
PGSC0003DMT400019294	Potato	nucleus	40.9	52.49
PGSC0003DMT400002155	Potato	nucleus	47.46	50.96
VIT_01s0011g02940.t01	Wine grape	nucleus	52.54	50.43
KRG92013	Soybean	nucleus	49.55	47.84
KRH34774	Soybean	nucleus	49.55	47.03
CDY07364	Canola	nucleus	49.25	46.74
CDX95989	Canola	nucleus	48.96	46.46
CDY33592	Canola	nucleus	48.96	46.33
CDY04259	Canola	nucleus	48.96	46.33
KRH75497	Soybean	nucleus	51.34	45.74
KRH70619	Soybean	nucleus	49.85	44.89
TraesCS5B01G229000.1	Wheat	nucleus	38.21	38.32
TraesCS5D01G237300.1	Wheat	nucleus	38.21	37.98
Os08t0432800-01	Rice	nucleus	38.81	37.68
TraesCS5A01G230500.1	Wheat	nucleus	37.61	37.61
HORVU4Hr1G061760.1	Barley	nucleus	44.48	37.06
TraesCS4D01G217700.1	Wheat	nucleus	44.78	36.95
Zm00001d032213_P001	Maize	nucleus	38.81	36.83
TraesCS4B01G217400.1	Wheat	nucleus	44.48	36.7
TraesCS4A01G087000.1	Wheat	nucleus	44.48	36.7
Zm00001d028504_P001	Maize	nucleus	42.39	36.32
CDY23874	Canola	nucleus	25.67	36.29
CDY57584	Canola	nucleus	27.46	36.22
CDY06944	Canola	nucleus	27.46	36.22
Os03t0260600-01	Rice	nucleus	43.88	35.94
Zm00001d050394_P001	Maize	nucleus	39.4	35.68
Zm00001d005740_P001	Maize	nucleus	37.01	35.63
CDX90384	Canola	cytosol	17.31	35.58
EER98886	Sorghum	nucleus	37.31	35.41
CDX79957	Canola	nucleus	26.27	35.2
Os09t0410700-00	Rice	nucleus	37.91	34.99
CDY22504	Canola	nucleus	25.37	34.98
HORVU5Hr1G066530.2	Barley	cytosol, nucleus	37.91	34.6
EES15038	Sorghum	nucleus	39.7	33.93
OQU92884	Sorghum	nucleus	44.18	33.26
Zm00001d047878_P001	Maize	nucleus	40.9	32.08
CDX76011	Canola	nucleus	21.79	31.47
CDY07066	Canola	nucleus, plastid	23.28	30.83
CDX93211	Canola	nucleus, plastid	22.99	30.43
CDY07615	Canola	nucleus	20.9	30.04
CDY24921	Canola	nucleus	21.19	29.58
CDY52514	Canola	cytosol	19.1	4.45

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	GO:A0A078FGN0	UniProt:A0A078FGN0	EnsemblPlants:CDY13580	ProteinID:CDY13580
ProteinID:CDY13580.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00077981001
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF77	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EE4D09	InterPro:bHLH_dom	SEG:seg

Description

BnaA06g33430DBnaA06g33430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGN0]

Coordinates

chrLK032037:+:39047..40778

Molecular Weight (calculated)

38343.5 Da

IEP (calculated)

6.265

GRAVY (calculated)

-0.857

Length

335 amino acids

Sequence
(BLAST)

001: MYAMKEEDCL QTFHNLQDYQ DQFLLHLHPQ NHPWSSLPSF DPTHFPSNPT RYPDPVHYFN KRASSSSSFD YTDGFVSPPM DNHHHQNHLR ILSEALGPIM
101: RRGSSFGFDG EDMGKMSAQE VMDAKALAAS KSHSEAERRR RERINTHLAK LRSILPNTTK TDKASLLAEV IQHMKELKRQ TSLVTETCQV PTESDDLTVD
201: STYNDEEGNL VIRASFCCGD RTDLIHDVIN ALKSLHLRTL KAEIATVGGR VKNVLFLSRD DHEDDGFEYR NDALEHDDEE KRYNRVSSIE EALKAVIEKC
301: VNNNDENNDN NNLEKSSSGS IKRQRTSKMA NRFYN

Best Arabidopsis Sequence Match ( AT3G25710.1 )
(BLAST)

001: MYAMKEEDCL QTFHNLQDYQ DQFHLHHHPQ ILPWSSTSLP SFDPLHFPSN PTRYSDPVHY FNRRASSSSS SFDYNDGFVS PPPSMDHPQN HLRILSEALG
101: PIMRRGSSFG FDGEIMGKLS AQEVMDAKAL AASKSHSEAE RRRRERINTH LAKLRSILPN TTKTDKASLL AEVIQHMKEL KRQTSQITDT YQVPTECDDL
201: TVDSSYNDEE GNLVIRASFC CQDRTDLMHD VINALKSLRL RTLKAEIATV GGRVKNILFL SREYDDEEDH DSYRRNFDGD DVEDYDEERM MNNRVSSIEE
301: ALKAVIEKCV HNNDESNDNN NLEKSSSGGI KRQRTSKMVN RCYN

Arabidopsis Description

BHLH32Transcription factor AIG1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS08]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.