Factsheet for Os09t0410700-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0656300-01
Os03t0206900-01
Os03t0309800-02
Os03t0596900-01
Os04t0386300-01
Os06t0679100-00
Os12t0580700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68810.1	Os03t0596900-01	AT4G26630.1	25387881
AT3G25710.1	Os03t0206900-01	AT1G49850.1	21798944
AT3G25710.1	Os12t0580700-01	AT1G49850.1	21798944
AT3G25710.1	Os03t0309800-02	AT3G06430.1	21798944
AT3G25710.1	Os02t0656300-01	AT3G48150.1	21798944
AT3G25710.1	Os06t0679100-00	AT3G48150.1	21798944
AT3G25710.1	Os04t0386300-01	AT3G48550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G237300.1	Wheat	nucleus	69.7	75.07
TraesCS5A01G230500.1	Wheat	nucleus	68.87	74.63
TraesCS5B01G229000.1	Wheat	nucleus	68.32	74.25
Zm00001d005740_P001	Maize	nucleus	66.39	69.25
HORVU5Hr1G066530.2	Barley	cytosol, nucleus	68.87	68.12
EER98886	Sorghum	nucleus	65.56	67.42
GSMUA_Achr6P30610_001	Banana	nucleus	33.33	63.35
GSMUA_Achr7P07280_001	Banana	nucleus	32.78	61.66
Os08t0432800-01	Rice	nucleus	57.85	60.87
Solyc04g006990.2.1	Tomato	nucleus	32.78	56.4
Bra025158.1-P	Field mustard	nucleus	31.41	51.12
PGSC0003DMT400019294	Potato	nucleus	34.44	47.89
Solyc05g009880.2.1	Tomato	nucleus	37.47	45.33
PGSC0003DMT400002155	Potato	nucleus	37.47	43.59
VIT_01s0011g02940.t01	Wine grape	nucleus	40.5	42.12
CDX99756	Canola	nucleus	35.81	39.04
Bra026510.1-P	Field mustard	nucleus	35.81	38.81
KRH70619	Soybean	nucleus	39.67	38.71
KRG92013	Soybean	nucleus	36.64	38.33
KRH75497	Soybean	nucleus	39.39	38.03
CDY13580	Canola	nucleus	34.99	37.91
KRH34774	Soybean	nucleus	36.64	37.68
CDX95989	Canola	nucleus	36.64	37.68
CDX83546	Canola	nucleus	34.71	37.61
CDY33592	Canola	nucleus	36.64	37.57
Bra004338.1-P	Field mustard	nucleus	36.64	37.57
AT3G25710.1	Thale cress	nucleus	35.54	37.5
CDY07364	Canola	nucleus	36.09	37.11
Bra004015.1-P	Field mustard	nucleus	36.09	37.11
AT1G68810.1	Thale cress	nucleus	37.19	36.68
CDY04259	Canola	nucleus	35.54	36.44
Os08t0477900-00	Rice	nucleus	22.31	36.32
Os03t0260600-01	Rice	nucleus	39.12	34.72
Os03t0811400-00	Rice	nucleus	25.07	33.96
Os01t0218100-01	Rice	nucleus	24.52	33.33
Os05t0163900-01	Rice	nucleus	22.04	29.52

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:4347032	ProteinID:BAD28357.1	ProteinID:BAT08043.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlantsGene:Os09g0410700	EnsemblPlants:Os09t0410700-00
PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF98	UniProt:Q6ESL3	SMART:SM00353
SUPFAM:SSF47459	SUPFAM:SSF55021	UniParc:UPI00003CE6A2	RefSeq:XP_015651269.1	InterPro:bHLH_dom	SEG:seg

Description

basic helix-loop-helix protein 039Helix-loop-helix DNA-binding domain containing protein. (Os09t0410700-00)

Coordinates

chr9:-:14583538..14586281

Molecular Weight (calculated)

37757.1 Da

IEP (calculated)

5.611

GRAVY (calculated)

-0.291

Length

363 amino acids

Sequence
(BLAST)

001: MWEGGSHDAA AQLLPWFVGE PAAAAVGGYG GCVDVVGQGG VFGFGFEAAA APVVTRQQRG GAAAAEGSSR GGGGKPAVVS GLLGSLQAEL GRVTAREIMD
101: AKALAASRSH SEAERRRRQR INGHLARLRS LLPNTTKTDK ASLLAEVIEH VKELKRQTTA IAAAAAAGDY HGNDEDDDDA VVGRRSAAAQ QLLPTEADEL
201: AVDAAVDAEG KLVVRASLCC EDRPDLIPDI ARALAALRLR ARRAEITTLG GRVRSVLLIT ADEQQQQHCD DVDDDEDGHR LLLRHGIDGA GAAADDDDEC
301: AASHRRHECI ATVQEALRGV MDRRAAASSG DTSSSGGAVV AGGGGGSIKR QRMNYGVHEQ CSV

Best Arabidopsis Sequence Match ( AT1G68810.1 )
(BLAST)

001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR

Arabidopsis Description

BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.