Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g009880.2.1 | Tomato | nucleus | 89.42 | 93.0 |
| GSMUA_Achr1P21280_001 | Banana | nucleus | 43.91 | 68.84 |
| GSMUA_Achr6P30610_001 | Banana | nucleus | 41.99 | 68.59 |
| GSMUA_Achr11P... | Banana | nucleus | 43.59 | 68.34 |
| GSMUA_Achr7P07280_001 | Banana | nucleus | 39.1 | 63.21 |
| PGSC0003DMT400019294 | Potato | nucleus | 52.24 | 62.45 |
| VIT_01s0011g02940.t01 | Wine grape | nucleus | 68.59 | 61.32 |
| Bra025158.1-P | Field mustard | nucleus | 42.63 | 59.64 |
| KRG92013 | Soybean | nucleus | 64.42 | 57.93 |
| KRH34774 | Soybean | nucleus | 64.42 | 56.94 |
| KRH75497 | Soybean | nucleus | 68.59 | 56.91 |
| KRH70619 | Soybean | nucleus | 66.99 | 56.18 |
| CDY33592 | Canola | nucleus | 57.69 | 50.85 |
| CDX95989 | Canola | nucleus | 57.37 | 50.71 |
| Bra004338.1-P | Field mustard | nucleus | 57.37 | 50.56 |
| AT1G68810.1 | Thale cress | nucleus | 59.62 | 50.54 |
| CDY07364 | Canola | nucleus | 56.41 | 49.86 |
| Bra004015.1-P | Field mustard | nucleus | 56.41 | 49.86 |
| CDY04259 | Canola | nucleus | 55.45 | 48.87 |
| CDY13580 | Canola | nucleus | 50.96 | 47.46 |
| CDX99756 | Canola | nucleus | 50.64 | 47.45 |
| CDX83546 | Canola | nucleus | 50.64 | 47.16 |
| Bra026510.1-P | Field mustard | nucleus | 50.0 | 46.57 |
| AT3G25710.1 | Thale cress | nucleus | 50.64 | 45.93 |
| HORVU4Hr1G061760.1 | Barley | nucleus | 53.85 | 41.79 |
| TraesCS4B01G217400.1 | Wheat | nucleus | 53.85 | 41.38 |
| TraesCS4D01G217700.1 | Wheat | nucleus | 53.85 | 41.38 |
| TraesCS5A01G230500.1 | Wheat | nucleus | 43.91 | 40.9 |
| TraesCS4A01G087000.1 | Wheat | nucleus | 53.21 | 40.89 |
| TraesCS5B01G229000.1 | Wheat | nucleus | 43.59 | 40.72 |
| TraesCS5D01G237300.1 | Wheat | nucleus | 43.59 | 40.36 |
| Zm00001d028504_P001 | Maize | nucleus | 50.32 | 40.15 |
| Os03t0260600-01 | Rice | nucleus | 52.24 | 39.85 |
| Os08t0432800-01 | Rice | nucleus | 42.31 | 38.26 |
| Zm00001d032213_P001 | Maize | nucleus | 42.63 | 37.68 |
| Zm00001d005740_P001 | Maize | nucleus | 41.99 | 37.64 |
| HORVU5Hr1G066530.2 | Barley | cytosol, nucleus | 44.23 | 37.6 |
| Os09t0410700-00 | Rice | nucleus | 43.59 | 37.47 |
| PGSC0003DMT400021599 | Potato | nucleus | 31.09 | 37.02 |
| EER98886 | Sorghum | nucleus | 41.67 | 36.83 |
| OQU92884 | Sorghum | nucleus | 52.24 | 36.63 |
| Zm00001d050394_P001 | Maize | nucleus | 43.27 | 36.49 |
| PGSC0003DMT400052622 | Potato | nucleus | 29.49 | 36.08 |
| EES15038 | Sorghum | nucleus | 44.23 | 35.2 |
| PGSC0003DMT400026449 | Potato | mitochondrion | 26.28 | 34.89 |
| PGSC0003DMT400060615 | Potato | cytosol | 25.0 | 34.82 |
| Zm00001d047878_P001 | Maize | nucleus | 46.79 | 34.19 |
| PGSC0003DMT400071293 | Potato | nucleus | 22.76 | 31.7 |
| PGSC0003DMT400040448 | Potato | nucleus | 21.47 | 29.78 |
| PGSC0003DMT400024185 | Potato | nucleus | 18.91 | 28.92 |
Protein Annotations
| EntrezGene:102582354 | MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M0ZJQ7 | PFAM:PF00010 |
| EnsemblPlantsGene:PGSC0003DMG400000824 | PGSC:PGSC0003DMG400000824 | EnsemblPlants:PGSC0003DMT400002155 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF77 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002963495 | RefSeq:XP_006362528.1 | InterPro:bHLH_dom | SEG:seg |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000824]
Coordinates
chr5:-:1912078..1916897
Molecular Weight (calculated)
34999.4 Da
IEP (calculated)
6.445
GRAVY (calculated)
-0.568
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MHPQSFMNPV HFQSNSEMLP WSIPPVQPYL NPVHHHDQSF LLPPSPSAYG LFNRNTTMDQ QHLRFISDSL VGQVVHHHNQ PGSIAPFGLQ AELQKMSAQE
101: IMDAKALAAS KSHSEAERRR RERINNHLAK LRSLLPNTTK TDKASLLAEV IQHVKELKRQ TSLISETSLV PTEIDELTVD NATSDEDGKF LIKASLCCED
201: RSDLLPDLIK TLKALRLKTL KAEITTLGGR VRNVLFITGD DYYCDDSNNN RDHIDPCTSG DDEDTQMMQQ QPQYCISSIQ EALKAVMEKS SGDDSASTSV
301: KRQRTNSINI LS
101: IMDAKALAAS KSHSEAERRR RERINNHLAK LRSLLPNTTK TDKASLLAEV IQHVKELKRQ TSLISETSLV PTEIDELTVD NATSDEDGKF LIKASLCCED
201: RSDLLPDLIK TLKALRLKTL KAEITTLGGR VRNVLFITGD DYYCDDSNNN RDHIDPCTSG DDEDTQMMQQ QPQYCISSIQ EALKAVMEKS SGDDSASTSV
301: KRQRTNSINI LS
001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR
Arabidopsis Description
BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.