Factsheet for PGSC0003DMT400021599

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g078380.1.1	Tomato	nucleus	95.04	95.4
VIT_08s0040g01240.t01	Wine grape	nucleus	47.71	52.3
CDY23874	Canola	nucleus	46.18	51.05
KRH54953	Soybean	nucleus	49.24	50.99
KRG95083	Soybean	nucleus	47.71	49.8
CDY22504	Canola	nucleus	45.8	49.38
KRH66750	Soybean	plastid	46.56	49.0
CDX79957	Canola	nucleus	46.56	48.8
Bra004599.1-P	Field mustard	nucleus	46.18	48.4
AT2G41130.1	Thale cress	nucleus	45.8	47.43
AT3G56770.1	Thale cress	nucleus	41.22	46.96
CDY06944	Canola	nucleus	45.42	46.85
Bra016951.1-P	Field mustard	nucleus	45.42	46.85
CDY57584	Canola	nucleus	45.04	46.46
GSMUA_Achr8P23980_001	Banana	nucleus	39.31	45.37
CDX76011	Canola	nucleus	38.17	43.1
Bra014672.1-P	Field mustard	nucleus	38.17	43.1
TraesCS5D01G479100.1	Wheat	nucleus	38.93	40.64
Zm00001d034596_P001	Maize	nucleus	35.5	40.61
TraesCS5B01G478000.1	Wheat	nucleus	38.55	40.24
TraesCS5A01G466300.1	Wheat	plastid	38.17	40.0
EER93220	Sorghum	nucleus	38.17	37.45
Os03t0811400-00	Rice	nucleus	38.17	37.31
PGSC0003DMT400019294	Potato	nucleus	35.5	35.63
GSMUA_Achr7P21370_001	Banana	nucleus	37.02	32.99
PGSC0003DMT400060615	Potato	cytosol	27.48	32.14
PGSC0003DMT400002155	Potato	nucleus	37.02	31.09
PGSC0003DMT400071293	Potato	nucleus	25.95	30.36
PGSC0003DMT400026449	Potato	mitochondrion	25.95	28.94
PGSC0003DMT400024185	Potato	nucleus	22.52	28.92
PGSC0003DMT400052622	Potato	nucleus	27.48	28.24
PGSC0003DMT400040448	Potato	nucleus	23.28	27.11

Protein Annotations

EntrezGene:102598787	MapMan:15.5.32	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M1AFE2	PFAM:PF00010
EnsemblPlantsGene:PGSC0003DMG400008378	PGSC:PGSC0003DMG400008378	EnsemblPlants:PGSC0003DMT400021599	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF158
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002949E43	RefSeq:XP_006362291.2	InterPro:bHLH_dom	SEG:seg

Description

BHLH domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400008378]

Coordinates

chr10:-:59278250..59280345

Molecular Weight (calculated)

29888.0 Da

IEP (calculated)

6.937

GRAVY (calculated)

-0.769

Length

262 amino acids

Sequence
(BLAST)

001: MQQQQDFQEN LESCNYFSKN KSSSSDNNMM GDYYGFDIEA IKSFCSSSPF YPHDHHVEFQ ETIESNNNNN NSPEARAKNH KEAERRRRER INSHLHSLRT
101: LLSCNSKLDK ASLLAKVVQR VRELKEQTSQ IMQSETNLLF PSETDEISVL SSNDCLADGR LLIKASLCCE DRSDLIPDLI ETLKSLGLSP IRAEMVTLGG
201: RIRNVIVLAV DHKESNNNNT DHDESSLLFL RDALRSIVQR SSYGTSERGK RRRVLGQGTR NY

Best Arabidopsis Sequence Match ( AT2G41130.1 )
(BLAST)

001: MQPETSDQML YSFLAGNEVG GGGYCVSGDY MTTMQSLCGS SSSTSSYYPL AISGIGETMA QDRALAALRN HKEAERRRRE RINSHLNKLR NVLSCNSKTD
101: KATLLAKVVQ RVRELKQQTL ETSDSDQTLL PSETDEISVL HFGDYSNDGH IIFKASLCCE DRSDLLPDLM EILKSLNMKT LRAEMVTIGG RTRSVLVVAA
201: DKEMHGVESV HFLQNALKSL LERSSKSLME RSSGGGGGER SKRRRALDHI IMV

Arabidopsis Description

BHLH106Transcription factor bHLH106 [Source:UniProtKB/Swiss-Prot;Acc:O80674]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.