Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004599.1-P | Field mustard | nucleus | 99.6 | 99.6 |
| CDY23874 | Canola | nucleus | 94.4 | 99.58 |
| CDY06944 | Canola | nucleus | 94.0 | 92.52 |
| CDY57584 | Canola | nucleus | 93.6 | 92.13 |
| AT2G41130.1 | Thale cress | nucleus | 93.2 | 92.09 |
| CDY22504 | Canola | nucleus | 88.4 | 90.95 |
| CDX76011 | Canola | nucleus | 61.2 | 65.95 |
| KRH66750 | Soybean | plastid | 57.6 | 57.83 |
| KRG95083 | Soybean | nucleus | 57.6 | 57.37 |
| VIT_08s0040g01240.t01 | Wine grape | nucleus | 54.8 | 57.32 |
| KRH54953 | Soybean | nucleus | 55.6 | 54.94 |
| GSMUA_Achr8P23980_001 | Banana | nucleus | 42.4 | 46.7 |
| PGSC0003DMT400021599 | Potato | nucleus | 48.8 | 46.56 |
| Solyc10g078380.1.1 | Tomato | nucleus | 47.2 | 45.21 |
| Zm00001d034596_P001 | Maize | nucleus | 39.6 | 43.23 |
| TraesCS5D01G479100.1 | Wheat | nucleus | 42.4 | 42.23 |
| TraesCS5A01G466300.1 | Wheat | plastid | 42.0 | 42.0 |
| TraesCS5B01G478000.1 | Wheat | nucleus | 42.0 | 41.83 |
| EER93220 | Sorghum | nucleus | 43.6 | 40.82 |
| Os03t0811400-00 | Rice | nucleus | 42.4 | 39.55 |
| GSMUA_Achr7P21370_001 | Banana | nucleus | 40.4 | 34.35 |
| CDX90384 | Canola | cytosol | 21.2 | 32.52 |
| CDY24921 | Canola | nucleus | 29.6 | 30.83 |
| CDY07615 | Canola | nucleus | 27.6 | 29.61 |
| CDY07066 | Canola | nucleus, plastid | 29.6 | 29.25 |
| CDX93211 | Canola | nucleus, plastid | 29.6 | 29.25 |
| CDX95989 | Canola | nucleus | 37.6 | 26.63 |
| CDX83546 | Canola | nucleus | 35.6 | 26.57 |
| CDY33592 | Canola | nucleus | 37.6 | 26.55 |
| CDY13580 | Canola | nucleus | 35.2 | 26.27 |
| CDY07364 | Canola | nucleus | 36.4 | 25.78 |
| CDY04259 | Canola | nucleus | 36.4 | 25.71 |
| CDX99756 | Canola | nucleus | 32.8 | 24.62 |
| CDY52514 | Canola | cytosol | 22.0 | 3.82 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078CT65 | EnsemblPlants:CDX79957 | ProteinID:CDX79957 | ProteinID:CDX79957.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00132819001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF158 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EDB115 | InterPro:bHLH_dom | SEG:seg |
Description
BnaA05g01990D
Coordinates
chrLK031819:-:1041260..1042587
Molecular Weight (calculated)
27851.3 Da
IEP (calculated)
7.914
GRAVY (calculated)
-0.446
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MQPESSDQML YSFLSGNQIS GGGYCGSDDY LSTMQSLCGS SSSTSSYYPL AISGIGETMA QDRALAALRN HKEAERRRRE RINSHLNKLR NVLSCNSKTD
101: KATLLAKVVQ RVKELKQQTL EISESDQTLL PSETDEISVL HYGDYSNDGH IIFKASLCCD DRSDLLPDLM EILKSLHMKT LRAEMVTLGG RTRSVLVVAA
201: DKEMHGVESV HFLQNALKSL LERSSKSLME RSSGGERSKR RRALDQIIMV
101: KATLLAKVVQ RVKELKQQTL EISESDQTLL PSETDEISVL HYGDYSNDGH IIFKASLCCD DRSDLLPDLM EILKSLHMKT LRAEMVTLGG RTRSVLVVAA
201: DKEMHGVESV HFLQNALKSL LERSSKSLME RSSGGERSKR RRALDQIIMV
001: MQPETSDQML YSFLAGNEVG GGGYCVSGDY MTTMQSLCGS SSSTSSYYPL AISGIGETMA QDRALAALRN HKEAERRRRE RINSHLNKLR NVLSCNSKTD
101: KATLLAKVVQ RVRELKQQTL ETSDSDQTLL PSETDEISVL HFGDYSNDGH IIFKASLCCE DRSDLLPDLM EILKSLNMKT LRAEMVTIGG RTRSVLVVAA
201: DKEMHGVESV HFLQNALKSL LERSSKSLME RSSGGGGGER SKRRRALDHI IMV
101: KATLLAKVVQ RVRELKQQTL ETSDSDQTLL PSETDEISVL HFGDYSNDGH IIFKASLCCE DRSDLLPDLM EILKSLNMKT LRAEMVTIGG RTRSVLVVAA
201: DKEMHGVESV HFLQNALKSL LERSSKSLME RSSGGGGGER SKRRRALDHI IMV
Arabidopsis Description
BHLH106Transcription factor bHLH106 [Source:UniProtKB/Swiss-Prot;Acc:O80674]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.