Factsheet for TraesCS5A01G466300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

plastid: 16595579
plastid: 18419817

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G479100.1	Wheat	nucleus	98.8	98.41
TraesCS5B01G478000.1	Wheat	nucleus	98.0	97.61
Zm00001d034596_P001	Maize	nucleus	72.4	79.04
Os03t0811400-00	Rice	nucleus	82.0	76.49
EER93220	Sorghum	nucleus	78.4	73.41
GSMUA_Achr8P23980_001	Banana	nucleus	49.2	54.19
CDY23874	Canola	nucleus	42.0	44.3
KRH54953	Soybean	nucleus	44.0	43.48
KRH66750	Soybean	plastid	42.4	42.57
CDY22504	Canola	nucleus	41.2	42.39
KRG95083	Soybean	nucleus	42.4	42.23
CDX79957	Canola	nucleus	42.0	42.0
GSMUA_Achr7P21370_001	Banana	nucleus	49.2	41.84
Bra004599.1-P	Field mustard	nucleus	41.6	41.6
AT2G41130.1	Thale cress	nucleus	41.2	40.71
CDY57584	Canola	nucleus	40.8	40.16
CDY06944	Canola	nucleus	40.8	40.16
Bra016951.1-P	Field mustard	nucleus	40.8	40.16
VIT_08s0040g01240.t01	Wine grape	nucleus	38.0	39.75
PGSC0003DMT400021599	Potato	nucleus	40.0	38.17
Solyc10g078380.1.1	Tomato	nucleus	39.6	37.93
AT3G56770.1	Thale cress	nucleus	34.4	37.39
Bra014672.1-P	Field mustard	nucleus	33.6	36.21
CDX76011	Canola	nucleus	33.6	36.21
TraesCS5A01G245600.1	Wheat	nucleus	26.0	33.68
TraesCS2A01G472300.1	Wheat	nucleus	26.4	31.43
TraesCS1A01G110400.1	Wheat	plastid	24.4	28.77
TraesCS3A01G102900.1	Wheat	nucleus, plastid	27.6	27.82
TraesCS3A01G142900.1	Wheat	nucleus	27.2	26.15
TraesCS5A01G230500.1	Wheat	nucleus	34.8	25.97
TraesCS4A01G087000.1	Wheat	nucleus	38.8	23.89
TraesCS3A01G102600.1	Wheat	extracellular, mitochondrion	28.4	21.26

Protein Annotations

EnsemblPlants:TraesCS5A01G466300.1	EnsemblPlantsGene:TraesCS5A01G466300	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR12565	PANTHER:PTHR12565:SF158	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	MapMan:15.5.32	:	:	:	:

Description

No Description!

Coordinates

chr5A:+:644859123..644860422

Molecular Weight (calculated)

26363.3 Da

IEP (calculated)

6.260

GRAVY (calculated)

-0.207

Length

250 amino acids

Sequence
(BLAST)

001: MFPAEASFAG AEAAMLPPFF VGSMWQSAPG GGAAALSEED EVAAAAAAEA AHDRAVAATR NHREAEKRRR ERIKSHLDRL RAVLACDPKI DKATLLAKAV
101: ERVRELKQRM DGVVGEAAAP ASHLFPTEHD EIVVLASGGG AGGAAAVFEA SVCCDDRSDL LPGLIDTLRA LRLRTLRAEM ATLGGRVRNV LVLARDAGGH
201: ADDDYSTSSE DGGADFLKEA LRALVERQGA AAGDRPKRRR VADMNMQAAA

Best Arabidopsis Sequence Match ( AT2G41130.1 )
(BLAST)

001: MQPETSDQML YSFLAGNEVG GGGYCVSGDY MTTMQSLCGS SSSTSSYYPL AISGIGETMA QDRALAALRN HKEAERRRRE RINSHLNKLR NVLSCNSKTD
101: KATLLAKVVQ RVRELKQQTL ETSDSDQTLL PSETDEISVL HFGDYSNDGH IIFKASLCCE DRSDLLPDLM EILKSLNMKT LRAEMVTIGG RTRSVLVVAA
201: DKEMHGVESV HFLQNALKSL LERSSKSLME RSSGGGGGER SKRRRALDHI IMV

Arabidopsis Description

BHLH106Transcription factor bHLH106 [Source:UniProtKB/Swiss-Prot;Acc:O80674]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.