Factsheet for GSMUA_Achr8P23980_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P21370_001	Banana	nucleus	78.41	60.54
Zm00001d034596_P001	Maize	nucleus	52.86	52.4
Os03t0811400-00	Rice	nucleus	58.59	49.63
TraesCS5D01G479100.1	Wheat	nucleus	54.63	49.4
TraesCS5A01G466300.1	Wheat	plastid	54.19	49.2
TraesCS5B01G478000.1	Wheat	nucleus	54.19	49.0
EER93220	Sorghum	nucleus	56.83	48.31
VIT_08s0040g01240.t01	Wine grape	nucleus	47.14	44.77
CDY23874	Canola	nucleus	46.7	44.73
KRH66750	Soybean	plastid	48.9	44.58
GSMUA_Achr6P30610_001	Banana	nucleus	37.44	44.5
CDY22504	Canola	nucleus	47.14	44.03
KRH54953	Soybean	nucleus	48.46	43.48
GSMUA_Achr11P...	Banana	nucleus	37.89	43.22
KRG95083	Soybean	nucleus	47.58	43.03
GSMUA_Achr7P07280_001	Banana	nucleus	36.12	42.49
CDX79957	Canola	nucleus	46.7	42.4
GSMUA_Achr1P21280_001	Banana	nucleus	37.0	42.21
CDY57584	Canola	nucleus	47.14	42.13
CDY06944	Canola	nucleus	47.14	42.13
Bra016951.1-P	Field mustard	nucleus	47.14	42.13
Bra004599.1-P	Field mustard	nucleus	46.26	42.0
AT2G41130.1	Thale cress	nucleus	45.81	41.11
AT3G56770.1	Thale cress	nucleus	40.53	40.0
PGSC0003DMT400021599	Potato	nucleus	45.37	39.31
Solyc10g078380.1.1	Tomato	nucleus	44.49	38.7
CDX76011	Canola	nucleus	38.33	37.5
Bra014672.1-P	Field mustard	nucleus	38.33	37.5
GSMUA_Achr3P06780_001	Banana	cytosol	28.63	31.71
GSMUA_Achr3P03510_001	Banana	nucleus	32.16	30.29
GSMUA_Achr7P10740_001	Banana	nucleus	33.04	29.88
GSMUA_Achr5P29390_001	Banana	nucleus	30.4	29.61
GSMUA_Achr2P20040_001	Banana	nucleus	31.72	28.92
GSMUA_Achr10P...	Banana	nucleus	32.6	28.91
GSMUA_Achr9P15140_001	Banana	plastid	28.63	28.26

Protein Annotations

EnsemblPlants:GSMUA_Achr8P23980_001	EnsemblPlants:GSMUA_Achr8T23980_001	EnsemblPlantsGene:GSMUA_Achr8G23980_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF158	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002959406	UniProt:M0TT51	MapMan:15.5.32	:	:

Description

Transcription factor bHLH106 [Source:GMGC_GENE;Acc:GSMUA_Achr8G23980_001]

Coordinates

chr8:-:28302877..28304260

Molecular Weight (calculated)

25673.2 Da

IEP (calculated)

4.586

GRAVY (calculated)

-0.660

Length

227 amino acids

Sequence
(BLAST)

001: MSNGLPAYFV SSFYPHMEME MEMEMSGDAI DATPMDRALA ASRNHREAER RRRERIKSHL DRLRSILACD PKTDKASLLA KVVERMKDLK QRTEEIADTQ
101: FFPTETDEIV VLPSSAPISG QRSTFEASLC CEDRSDLLPE LIETLRSLHL KTLRAEIATL GGRVRNVLIL AKDEEAYEDA DDDDDDDDDD DGDSGGAFLR
201: DALKALVDRS LPAERCKRRR LVDRNPS

Best Arabidopsis Sequence Match ( AT2G41130.1 )
(BLAST)

001: MQPETSDQML YSFLAGNEVG GGGYCVSGDY MTTMQSLCGS SSSTSSYYPL AISGIGETMA QDRALAALRN HKEAERRRRE RINSHLNKLR NVLSCNSKTD
101: KATLLAKVVQ RVRELKQQTL ETSDSDQTLL PSETDEISVL HFGDYSNDGH IIFKASLCCE DRSDLLPDLM EILKSLNMKT LRAEMVTIGG RTRSVLVVAA
201: DKEMHGVESV HFLQNALKSL LERSSKSLME RSSGGGGGER SKRRRALDHI IMV

Arabidopsis Description

BHLH106Transcription factor bHLH106 [Source:UniProtKB/Swiss-Prot;Acc:O80674]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.