CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89318
CDX94304
CDX97358

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68810.1	CDX89318	AT4G26630.1	25387881
AT1G68810.1	CDX94304	AT4G26630.1	25387881
AT1G68810.1	CDX97358	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004015.1-P	Field mustard	nucleus	96.33	96.6
CDY07364	Canola	nucleus	96.33	96.6
CDX95989	Canola	nucleus	85.31	85.55
CDY33592	Canola	nucleus	85.31	85.31
AT1G68810.1	Thale cress	nucleus	87.29	83.97
Solyc04g006990.2.1	Tomato	nucleus	38.42	64.45
GSMUA_Achr6P30610_001	Banana	nucleus	33.62	62.3
GSMUA_Achr1P21280_001	Banana	nucleus	33.05	58.79
GSMUA_Achr7P07280_001	Banana	nucleus	31.92	58.55
GSMUA_Achr11P...	Banana	nucleus	32.77	58.29
VIT_01s0011g02940.t01	Wine grape	nucleus	57.06	57.88
Solyc05g009880.2.1	Tomato	nucleus	48.31	57.0
PGSC0003DMT400002155	Potato	nucleus	48.87	55.45
KRG92013	Soybean	nucleus	53.39	54.47
PGSC0003DMT400019294	Potato	nucleus	40.11	54.41
KRH34774	Soybean	nucleus	54.24	54.39
KRH70619	Soybean	nucleus	53.11	50.54
KRH75497	Soybean	nucleus	53.11	50.0
CDY13580	Canola	nucleus	46.33	48.96
CDX83546	Canola	nucleus	46.05	48.66
CDX99756	Canola	nucleus	44.07	46.85
TraesCS5B01G229000.1	Wheat	nucleus	37.01	39.22
HORVU4Hr1G061760.1	Barley	nucleus	44.35	39.05
TraesCS5D01G237300.1	Wheat	nucleus	37.01	38.87
TraesCS5A01G230500.1	Wheat	nucleus	36.72	38.81
TraesCS4D01G217700.1	Wheat	nucleus	44.35	38.67
Os03t0260600-01	Rice	nucleus	44.35	38.39
TraesCS4B01G217400.1	Wheat	nucleus	43.79	38.18
TraesCS4A01G087000.1	Wheat	nucleus	43.79	38.18
CDY23874	Canola	nucleus	25.42	37.97
Os08t0432800-01	Rice	nucleus	37.01	37.97
Zm00001d028504_P001	Maize	nucleus	40.96	37.08
CDY22504	Canola	nucleus	25.14	36.63
HORVU5Hr1G066530.2	Barley	cytosol, nucleus	37.85	36.51
CDX79957	Canola	nucleus	25.71	36.4
CDY06944	Canola	nucleus	25.99	36.22
Zm00001d032213_P001	Maize	nucleus	35.88	35.98
CDY57584	Canola	nucleus	25.71	35.83
Zm00001d050394_P001	Maize	nucleus	37.29	35.68
Os09t0410700-00	Rice	nucleus	36.44	35.54
Zm00001d005740_P001	Maize	nucleus	34.75	35.34
EER98886	Sorghum	nucleus	35.03	35.13
CDX76011	Canola	nucleus	22.88	34.91
OQU92884	Sorghum	nucleus	43.79	34.83
CDX90384	Canola	cytosol	15.54	33.74
EES15038	Sorghum	nucleus	37.29	33.67
Zm00001d047878_P001	Maize	nucleus	40.4	33.49
CDX93211	Canola	nucleus, plastid	21.19	29.64
CDY07066	Canola	nucleus, plastid	20.62	28.85
CDY24921	Canola	nucleus	18.93	27.92
CDY07615	Canola	nucleus	17.8	27.04
CDY52514	Canola	cytosol	16.95	4.17

Protein Annotations

EnsemblPlants:CDY04259	EnsemblPlantsGene:GSBRNA2T00117995001	Gene3D:4.10.280.10	GO:A0A078EUJ7	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF77	PFAM:PF00010	PFscan:PS50888	ProteinID:CDY04259	ProteinID:CDY04259.1
SEG:seg	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EE3290	MapMan:15.5.32	:

Description

BnaC06g25560D

Coordinates

chrLK031950:+:632313..633988

Molecular Weight (calculated)

39582.4 Da

IEP (calculated)

6.231

GRAVY (calculated)

-0.645

Length

354 amino acids

Sequence
(BLAST)

001: MCSKKEEVES SGAMNNIQNY PNNLFFHQLV SHHHHQEPSQ SETFRAPGYN VESGFTIFSH DSVSPIWPTS TQPQFDPFTP PTPQASFYES FFNRSRAHHQ
101: GLQFGYEGFD GGTSATHHHQ EQLRILSEAL GPVVQAGSGP FGLQGKLGKM TAQEIMDAKA LAASKSHSEA ERRRRERINN HLAKLRSILP NTTKTDKASL
201: LAEVIQHVKE LERETSVISE TNLVPTESDE LKVAFTEEEE TEDGRHVIKA SLCCEDRSDL LPDMIKTLKS MRLKTLKAEI TTAGGRVKNV LFVTGEESSG
301: EDMEDYCIGM IEEALKAVMG KCNVEESSSS VNAKRQRMSS HNPITIVEQQ QYHH

Best Arabidopsis Sequence Match ( AT1G68810.1 )
(BLAST)

001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR

Arabidopsis Description

BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.