Factsheet for HORVU5Hr1G066530.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

plastid 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G027080.4
HORVU4Hr1G013180.1
HORVU4Hr1G024360.2
HORVU4Hr1G035250.1
HORVU4Hr1G069450.3
HORVU5Hr1G019040.1
HORVU6Hr1G062870.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68810.1	HORVU4Hr1G035250.1	AT4G26630.1	25387881
AT3G25710.1	HORVU4Hr1G013180.1	AT1G49850.1	21798944
AT3G25710.1	HORVU4Hr1G069450.3	AT1G49850.1	21798944
AT3G25710.1	HORVU5Hr1G019040.1	AT1G49850.1	21798944
AT3G25710.1	HORVU4Hr1G024360.2	AT3G06430.1	21798944
AT3G25710.1	HORVU0Hr1G027080.4	AT3G48150.1	21798944
AT3G25710.1	HORVU6Hr1G062870.1	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G230500.1	Wheat	nucleus	84.47	92.54
TraesCS5D01G237300.1	Wheat	nucleus	84.47	91.99
TraesCS5B01G229000.1	Wheat	nucleus	83.11	91.32
Zm00001d005740_P001	Maize	nucleus	66.76	70.4
Os09t0410700-00	Rice	nucleus	68.12	68.87
EER98886	Sorghum	nucleus	66.21	68.84
GSMUA_Achr6P30610_001	Banana	nucleus	32.43	62.3
GSMUA_Achr7P07280_001	Banana	nucleus	31.88	60.62
Solyc04g006990.2.1	Tomato	nucleus	31.88	55.45
Bra025158.1-P	Field mustard	nucleus	31.34	51.57
PGSC0003DMT400019294	Potato	nucleus	33.52	47.13
Solyc05g009880.2.1	Tomato	nucleus	38.15	46.67
PGSC0003DMT400002155	Potato	nucleus	37.6	44.23
VIT_01s0011g02940.t01	Wine grape	nucleus	41.42	43.55
KRG92013	Soybean	nucleus	37.33	39.48
KRH70619	Soybean	nucleus	39.78	39.25
CDY07364	Canola	nucleus	37.33	38.81
KRH34774	Soybean	nucleus	37.33	38.81
Bra004015.1-P	Field mustard	nucleus	37.33	38.81
AT1G68810.1	Thale cress	nucleus	38.42	38.32
KRH75497	Soybean	nucleus	39.24	38.3
CDX95989	Canola	nucleus	36.78	38.24
CDX99756	Canola	nucleus	34.6	38.14
CDY33592	Canola	nucleus	36.78	38.14
Bra004338.1-P	Field mustard	nucleus	36.78	38.14
CDY13580	Canola	nucleus	34.6	37.91
CDY04259	Canola	nucleus	36.51	37.85
Bra026510.1-P	Field mustard	nucleus	34.33	37.61
CDX83546	Canola	nucleus	34.33	37.61
HORVU4Hr1G061760.1	Barley	nucleus	40.33	36.82
AT3G25710.1	Thale cress	nucleus	34.06	36.34
HORVU5Hr1G069580.1	Barley	nucleus	20.71	36.19
HORVU3Hr1G027630.3	Barley	nucleus	23.71	34.52
HORVU1Hr1G024280.2	Barley	plastid	17.98	31.13
HORVU3Hr1G018680.1	Barley	nucleus	21.53	29.48

Protein Annotations

EnsemblPlants:HORVU5Hr1G066530.2	EnsemblPlantsGene:HORVU5Hr1G066530	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF98	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
SUPFAM:SSF55021	UniParc:UPI000B4839F1	UniProt:A0A287RL23	MapMan:15.5.32	:	:

Description

No Description!

Coordinates

chrchr5H:+:507138337..507141355

Molecular Weight (calculated)

37864.6 Da

IEP (calculated)

5.291

GRAVY (calculated)

-0.304

Length

367 amino acids

Sequence
(BLAST)

001: VPPPPPPPPP PAPTSTKPAS RGRPVDGDMW EGGVHGSHQD AARLLPPWLG GPAAFADPVV GAAASGAGFG VGGYACDVVG QAGVFGFGFE AGVVAAQQQQ
101: RAAEAAAAGG SKAVVVSGLL GSLQAELGRM NAGEIMDAKA LAASRSHSEA ERRRRQRING HLARLRSLLP NTTKTDKASL LAEVLEHVKE LKRQTSAMTM
201: MAAAAVGGDE DDDGGPVQML PTEADELGVD AAEDGDGRLV VRASLCCEDR PDLIPDIIRA LAALRLRAHR AEITTLGGRV RSVLLITAEE GEEADDEGGR
301: VSGDGIDEEC AASHRRHECI ASVQEALRGV MDRRAACSND TSSSGGGGGG SIKRQRMNYG AHEQCSA

Best Arabidopsis Sequence Match ( AT1G68810.1 )
(BLAST)

001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR

Arabidopsis Description

BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.