Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G072600.1 | Wheat | nucleus | 80.51 | 86.56 |
| TraesCS5B01G078400.1 | Wheat | nucleus | 86.76 | 86.13 |
| TraesCS5D01G085300.1 | Wheat | nucleus | 84.93 | 84.0 |
| Os12t0580700-01 | Rice | nucleus | 56.99 | 60.08 |
| KXG23810 | Sorghum | cytosol | 54.41 | 56.7 |
| Zm00001d030843_P001 | Maize | nucleus | 41.54 | 46.12 |
| HORVU4Hr1G069450.3 | Barley | nucleus | 27.94 | 29.46 |
| HORVU4Hr1G013180.1 | Barley | nucleus | 34.19 | 27.11 |
| KRG91075 | Soybean | nucleus | 22.79 | 26.27 |
| CDY32837 | Canola | nucleus | 20.59 | 25.0 |
| CDY16531 | Canola | nucleus | 20.59 | 25.0 |
| Bra014221.1-P | Field mustard | nucleus | 20.22 | 24.89 |
| VIT_03s0091g00480.t01 | Wine grape | nucleus | 25.37 | 24.82 |
| KRH35698 | Soybean | nucleus | 22.43 | 24.8 |
| GSMUA_Achr4P32570_001 | Banana | nucleus | 23.9 | 24.44 |
| CDY61552 | Canola | nucleus | 21.32 | 24.27 |
| Bra039652.1-P | Field mustard | nucleus | 21.32 | 23.87 |
| Solyc01g107290.2.1 | Tomato | nucleus | 23.53 | 23.19 |
| CDY20854 | Canola | nucleus | 20.59 | 23.14 |
| PGSC0003DMT400066172 | Potato | nucleus | 24.26 | 22.92 |
| AT1G49850.1 | Thale cress | nucleus | 20.22 | 22.0 |
Protein Annotations
| EMBL:AK365430 | EMBL:AK372095 | EnsemblPlants:HORVU5Hr1G019040.1 | EnsemblPlantsGene:HORVU5Hr1G019040 | Gene3D:3.30.40.10 | InterPro:IPR001841 |
| InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF219 | PFAM:PF13639 |
| PFscan:PS50089 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002006A59 | UniProt:F2DNG2 |
| MapMan:35.2 | : | : | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DNG2]
Coordinates
chrchr5H:+:80754506..80757406
Molecular Weight (calculated)
29756.0 Da
IEP (calculated)
7.502
GRAVY (calculated)
-0.522
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MPIASKLLYF QRRPSPAPPD PPDPRRRPCR GASASGPRRQ RSSAVSHHHH HHHHHKPGQE LVPGIQRDGA KLVGCAGNKI EHIGFTCSSS TLSRSVSDHG
101: RLPDAVQQAR ERLLQRLNSV DLSGRRENTS SSETIWAGIV THPADIGASI VADSEVGSLT NYFQSSVSIT TYNRVQETFP EPLSAVDKCM PVAPCTQPVP
201: VLQGTACEDV EEGECARTSP ECSICLERCG EADGLMQLRC KHVFHSACLE RWLRSHGDCP YCRGSVLLTS DE
101: RLPDAVQQAR ERLLQRLNSV DLSGRRENTS SSETIWAGIV THPADIGASI VADSEVGSLT NYFQSSVSIT TYNRVQETFP EPLSAVDKCM PVAPCTQPVP
201: VLQGTACEDV EEGECARTSP ECSICLERCG EADGLMQLRC KHVFHSACLE RWLRSHGDCP YCRGSVLLTS DE
001: MATEQEAEVG TETSSVSGRF LRNRDLYLFL PFLLGFSDQE SSNGDDDDVA SSRERIILVN PFTQGMIVLE GSSGMNPLLR SLLESREEGR PPASKASIDA
101: MPIVEIDGCE GECVICLEEW KSEETVKEMP CKHRFHGGCI EKWLGFHGSC PVCRYEMPVD GDEIGKKRND GNEIWVRFSF NDGRRIRDFS AQDGGNSDGV
201: ESEN
101: MPIVEIDGCE GECVICLEEW KSEETVKEMP CKHRFHGGCI EKWLGFHGSC PVCRYEMPVD GDEIGKKRND GNEIWVRFSF NDGRRIRDFS AQDGGNSDGV
201: ESEN
Arabidopsis Description
MPSR1E3 ubiquitin-protein ligase MPSR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQX2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.