Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plastid 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20854 | Canola | nucleus | 72.8 | 75.21 |
| CDY61552 | Canola | nucleus | 70.8 | 74.06 |
| CDY32837 | Canola | nucleus | 66.0 | 73.66 |
| CDY16531 | Canola | nucleus | 65.6 | 73.21 |
| Bra014221.1-P | Field mustard | nucleus | 63.6 | 71.95 |
| Bra039652.1-P | Field mustard | nucleus | 69.6 | 71.6 |
| KRG91075 | Soybean | nucleus | 36.0 | 38.14 |
| Solyc01g107290.2.1 | Tomato | nucleus | 41.6 | 37.68 |
| KRH35698 | Soybean | nucleus | 36.0 | 36.59 |
| VIT_03s0091g00480.t01 | Wine grape | nucleus | 40.0 | 35.97 |
| PGSC0003DMT400066172 | Potato | nucleus | 41.2 | 35.76 |
| Zm00001d048134_P001 | Maize | nucleus | 34.0 | 31.25 |
| Zm00001d028055_P001 | Maize | nucleus | 33.6 | 30.88 |
| Os03t0206900-01 | Rice | nucleus | 33.2 | 30.51 |
| EER95307 | Sorghum | nucleus | 33.2 | 30.29 |
| HORVU4Hr1G069450.3 | Barley | nucleus | 30.0 | 29.07 |
| TraesCS4A01G049500.1 | Wheat | nucleus | 31.6 | 28.73 |
| TraesCS4B01G255400.1 | Wheat | nucleus | 31.6 | 28.62 |
| TraesCS4D01G255100.1 | Wheat | nucleus | 31.2 | 28.26 |
| GSMUA_Achr6P24690_001 | Banana | nucleus | 29.6 | 27.51 |
| Os12t0580700-01 | Rice | nucleus | 24.8 | 24.03 |
| GSMUA_Achr4P32570_001 | Banana | nucleus | 23.2 | 21.8 |
| KXG23810 | Sorghum | cytosol | 22.4 | 21.46 |
| TraesCS4B01G077700.1 | Wheat | cytosol | 22.0 | 20.99 |
| TraesCS5A01G072600.1 | Wheat | nucleus | 21.2 | 20.95 |
| TraesCS5D01G085300.1 | Wheat | nucleus | 22.8 | 20.73 |
| HORVU5Hr1G019040.1 | Barley | cytosol | 22.0 | 20.22 |
| TraesCS4A01G237400.1 | Wheat | mitochondrion, nucleus | 21.2 | 20.08 |
| TraesCS5B01G078400.1 | Wheat | nucleus | 22.0 | 20.07 |
| Zm00001d030843_P001 | Maize | nucleus | 18.4 | 18.78 |
| TraesCS4D01G076100.1 | Wheat | golgi, mitochondrion | 18.8 | 17.87 |
| HORVU4Hr1G013180.1 | Barley | nucleus | 22.0 | 16.04 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:841408 | UniProt:A0A178W6G7 | ProteinID:AAG51778.1 | ProteinID:AEE32483.1 |
| EMBL:AF079185 | EMBL:AK227950 | ArrayExpress:AT1G49850 | EnsemblPlantsGene:AT1G49850 | RefSeq:AT1G49850 | TAIR:AT1G49850 |
| RefSeq:AT1G49850-TAIR-G | EnsemblPlants:AT1G49850.1 | TAIR:AT1G49850.1 | EMBL:AY086250 | EMBL:BT004600 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0043161 | GO:GO:0046872 |
| GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_564556.1 | ProteinID:OAP13736.1 | PFAM:PF13639 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF293 | UniProt:Q852U6 | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI0000001CBC | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
RHY1AProbable E3 ubiquitin-protein ligase RHY1A [Source:UniProtKB/Swiss-Prot;Acc:Q852U6]
Coordinates
chr1:-:18454844..18456619
Molecular Weight (calculated)
28448.1 Da
IEP (calculated)
8.383
GRAVY (calculated)
-0.847
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSASELFST RRSRPGRSDP ALESDTSSYR HHSHHHHRRH GVHHHNQRHD SDGCDPLRRP TPRLRRFFHH PIQERSRPIR DVQGTSQYLN TDSTDTETQS
101: SSFVNLNGSE RLPGAVLLAR DRLFERLRGV SLSSNSRSNR VSLDDQRESS FHSIDGDPIF QLAGLQVTYE CNKKPQGLTQ DAINCLHRQT FSSAEVKSEM
201: RDCSICLESF TKGDMLISLP CTHSFHSSCL NPWLRACGDC PCCRRAIAKE
101: SSFVNLNGSE RLPGAVLLAR DRLFERLRGV SLSSNSRSNR VSLDDQRESS FHSIDGDPIF QLAGLQVTYE CNKKPQGLTQ DAINCLHRQT FSSAEVKSEM
201: RDCSICLESF TKGDMLISLP CTHSFHSSCL NPWLRACGDC PCCRRAIAKE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.