Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER95307 | Sorghum | nucleus | 90.44 | 89.78 |
| Zm00001d048134_P001 | Maize | nucleus | 86.76 | 86.76 |
| Os03t0206900-01 | Rice | nucleus | 79.78 | 79.78 |
| TraesCS4A01G049500.1 | Wheat | nucleus | 79.78 | 78.91 |
| TraesCS4D01G255100.1 | Wheat | nucleus | 79.78 | 78.62 |
| TraesCS4B01G255400.1 | Wheat | nucleus | 79.41 | 78.26 |
| HORVU4Hr1G069450.3 | Barley | nucleus | 73.9 | 77.91 |
| Bra014221.1-P | Field mustard | nucleus | 30.88 | 38.01 |
| CDY32837 | Canola | nucleus | 30.51 | 37.05 |
| CDY16531 | Canola | nucleus | 29.78 | 36.16 |
| CDY20854 | Canola | nucleus | 31.62 | 35.54 |
| CDY61552 | Canola | nucleus | 30.88 | 35.15 |
| Bra039652.1-P | Field mustard | nucleus | 31.25 | 34.98 |
| KRG91075 | Soybean | nucleus | 29.78 | 34.32 |
| AT1G49850.1 | Thale cress | nucleus | 30.88 | 33.6 |
| KRH35698 | Soybean | nucleus | 30.15 | 33.33 |
| Solyc01g107290.2.1 | Tomato | nucleus | 33.09 | 32.61 |
| VIT_03s0091g00480.t01 | Wine grape | nucleus | 31.99 | 31.3 |
| PGSC0003DMT400066172 | Potato | nucleus | 33.09 | 31.25 |
| GSMUA_Achr6P24690_001 | Banana | nucleus | 30.51 | 30.86 |
| Zm00001d030843_P001 | Maize | nucleus | 22.79 | 25.31 |
Protein Annotations
| EntrezGene:100274167 | Gene3D:3.30.40.10 | MapMan:35.2 | UniProt:B4FG50 | EMBL:BT036088 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0016874 | InterPro:IPR001841 | InterPro:IPR013083 | ProteinID:ONL94585.1 | PFAM:PF13639 |
| PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF293 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00017B7043 |
| EnsemblPlantsGene:Zm00001d028055 | EnsemblPlants:Zm00001d028055_P001 | EnsemblPlants:Zm00001d028055_T001 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
Probable E3 ubiquitin-protein ligase RHY1A
Coordinates
chr1:-:21774547..21776554
Molecular Weight (calculated)
30733.9 Da
IEP (calculated)
9.203
GRAVY (calculated)
-0.808
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSASELFTA RRAARGARLS DLDLDPHADA LRDQHGLGAR HRRRGCRPRR QLDAAGDVRQ HLHTGAPPPR RRGSYTDQIL SYIDNNNLGV GDSAARRNRL
101: DRLMFRTNER LPGAVLQAQA RVLERLRGIS LGSSVSRPSI SLDEFSASDV FRIIDFRNRE ARHEENRHHS SSFHPSSESD EERPTVGSTH SNRSTGLTKA
201: AFLRLQVEIF EASKDDSREA SPECSICLDG FYDGDELIRL RCGHRFHSTC LEPWARKCAD CPYCRTNIRS RS
101: DRLMFRTNER LPGAVLQAQA RVLERLRGIS LGSSVSRPSI SLDEFSASDV FRIIDFRNRE ARHEENRHHS SSFHPSSESD EERPTVGSTH SNRSTGLTKA
201: AFLRLQVEIF EASKDDSREA SPECSICLDG FYDGDELIRL RCGHRFHSTC LEPWARKCAD CPYCRTNIRS RS
001: MTSASELFST RRSRPGRSDP ALESDTSSYR HHSHHHHRRH GVHHHNQRHD SDGCDPLRRP TPRLRRFFHH PIQERSRPIR DVQGTSQYLN TDSTDTETQS
101: SSFVNLNGSE RLPGAVLLAR DRLFERLRGV SLSSNSRSNR VSLDDQRESS FHSIDGDPIF QLAGLQVTYE CNKKPQGLTQ DAINCLHRQT FSSAEVKSEM
201: RDCSICLESF TKGDMLISLP CTHSFHSSCL NPWLRACGDC PCCRRAIAKE
101: SSFVNLNGSE RLPGAVLLAR DRLFERLRGV SLSSNSRSNR VSLDDQRESS FHSIDGDPIF QLAGLQVTYE CNKKPQGLTQ DAINCLHRQT FSSAEVKSEM
201: RDCSICLESF TKGDMLISLP CTHSFHSSCL NPWLRACGDC PCCRRAIAKE
Arabidopsis Description
RHY1AProbable E3 ubiquitin-protein ligase RHY1A [Source:UniProtKB/Swiss-Prot;Acc:Q852U6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.