Factsheet for Bra039652.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000638.1-P
Bra000943.1-P
Bra006453.1-P
Bra009226.1-P
Bra009744.1-P
Bra009783.1-P
Bra010714.1-P
Bra011138.1-P
Bra012987.1-P
Bra013840.1-P
Bra015422.1-P
Bra018042.1-P
Bra019205.1-P
Bra020466.1-P
Bra026236.1-P
Bra033264.1-P
Bra033597.1-P
Bra035480.1-P
Bra037384.1-P
Bra037878.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G49850.1	Bra033264.1-P	AT1G01440.1	21798944
AT1G49850.1	Bra015422.1-P	AT1G05410.1	21798944
AT1G49850.1	Bra018042.1-P	AT3G48680.1	21798944
AT1G49850.1	Bra000943.1-P	AT4G01090.1	21798944
AT1G49850.1	Bra037384.1-P	AT4G01090.1	21798944
AT1G49850.1	Bra000638.1-P	AT4G08150.1	21798944
AT1G49850.1	Bra037878.1-P	AT4G08790.1	21798944
AT1G49850.1	Bra035480.1-P	AT4G10470.1	21798944
AT1G49850.1	Bra026236.1-P	AT4G17220.1	21798944
AT1G49850.1	Bra006453.1-P	AT4G24840.1	21798944
AT1G49850.1	Bra013840.1-P	AT4G24840.1	21798944
AT1G49850.1	Bra019205.1-P	AT4G24840.1	21798944
AT1G49850.1	Bra009744.1-P	AT4G29820.1	21798944
AT1G49850.1	Bra011138.1-P	AT4G29820.1	21798944
AT1G49850.1	Bra010714.1-P	AT4G39050.1	21798944
AT1G49850.1	Bra033597.1-P	AT4G39050.1	21798944
AT1G49850.1	Bra009226.1-P	AT5G06780.1	21798944
AT1G49850.1	Bra009783.1-P	AT5G24660.1	21798944
AT1G49850.1	Bra020466.1-P	AT5G24660.1	21798944
AT1G49850.1	Bra012987.1-P	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY61552	Canola	nucleus	90.95	92.47
Bra014221.1-P	Field mustard	nucleus	69.96	76.92
AT1G49850.1	Thale cress	nucleus	71.6	69.6
KRG91075	Soybean	nucleus	38.68	39.83
KRH35698	Soybean	nucleus	37.86	37.4
Solyc01g107290.2.1	Tomato	nucleus	40.33	35.51
VIT_03s0091g00480.t01	Wine grape	nucleus	39.92	34.89
PGSC0003DMT400066172	Potato	nucleus	40.74	34.38
EER95307	Sorghum	nucleus	36.63	32.48
Zm00001d048134_P001	Maize	nucleus	35.8	31.99
Os03t0206900-01	Rice	nucleus	35.39	31.62
Zm00001d028055_P001	Maize	nucleus	34.98	31.25
HORVU4Hr1G069450.3	Barley	nucleus	32.1	30.23
TraesCS4B01G255400.1	Wheat	nucleus	33.33	29.35
TraesCS4A01G049500.1	Wheat	nucleus	32.92	29.09
TraesCS4D01G255100.1	Wheat	nucleus	32.92	28.99
GSMUA_Achr6P24690_001	Banana	nucleus	30.45	27.51
Os12t0580700-01	Rice	nucleus	25.51	24.03
KXG23810	Sorghum	cytosol	25.51	23.75
Zm00001d030843_P001	Maize	nucleus	23.05	22.86
TraesCS5D01G085300.1	Wheat	nucleus	25.51	22.55
TraesCS4B01G077700.1	Wheat	cytosol	24.28	22.52
TraesCS5A01G072600.1	Wheat	nucleus	23.05	22.13
TraesCS5B01G078400.1	Wheat	nucleus	24.69	21.9
GSMUA_Achr4P32570_001	Banana	nucleus	23.46	21.43
HORVU5Hr1G019040.1	Barley	cytosol	23.87	21.32
TraesCS4A01G237400.1	Wheat	mitochondrion, nucleus	22.63	20.83
TraesCS4D01G076100.1	Wheat	golgi, mitochondrion	20.16	18.63
HORVU4Hr1G013180.1	Barley	nucleus	24.28	17.2

Protein Annotations

EnsemblPlants:Bra039652.1	EnsemblPlants:Bra039652.1-P	EnsemblPlantsGene:Bra039652	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF293	PFAM:PF13639	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000253EAAA	UniProt:M4FEY0	MapMan:35.1

Description

AT1G49850 (E=4e-075) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrScaffold000172:+:247864..248755

Molecular Weight (calculated)

27337.0 Da

IEP (calculated)

8.371

GRAVY (calculated)

-0.771

Length

243 amino acids

Sequence
(BLAST)

001: MTSASELFST RRSRPGRSDP DSESDSSLYR QHSHRRHGIH HLNHRHDSNG CDPPRRAPPR LRRFCHHLAL SERRPVHDVQ GTSQYLNTNG ADLETEGNSF
101: GSLERLPGAV LLARERLFER LRGVSLSSNS RTNRVTLSEN QRESSFYGEP EGIQVSYECN KKPLGLTQGA INGLHRLTFS SAEVKTERSD CSICLESFTN
201: GDMLISLPCT HSFHSSCLNP WLKACGDCPY CRRAIAKDIE TCK

Best Arabidopsis Sequence Match ( AT1G49850.1 )
(BLAST)

001: MTSASELFST RRSRPGRSDP ALESDTSSYR HHSHHHHRRH GVHHHNQRHD SDGCDPLRRP TPRLRRFFHH PIQERSRPIR DVQGTSQYLN TDSTDTETQS
101: SSFVNLNGSE RLPGAVLLAR DRLFERLRGV SLSSNSRSNR VSLDDQRESS FHSIDGDPIF QLAGLQVTYE CNKKPQGLTQ DAINCLHRQT FSSAEVKSEM
201: RDCSICLESF TKGDMLISLP CTHSFHSSCL NPWLRACGDC PCCRRAIAKE

Arabidopsis Description

RHY1AProbable E3 ubiquitin-protein ligase RHY1A [Source:UniProtKB/Swiss-Prot;Acc:Q852U6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.