Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G237400.1 | Wheat | mitochondrion, nucleus | 76.72 | 76.14 |
| TraesCS4D01G076100.1 | Wheat | golgi, mitochondrion | 64.89 | 64.64 |
| HORVU4Hr1G013180.1 | Barley | nucleus | 74.05 | 56.56 |
| TraesCS5B01G078400.1 | Wheat | nucleus | 38.93 | 37.23 |
| Bra014221.1-P | Field mustard | nucleus | 23.66 | 28.05 |
| CDY32837 | Canola | nucleus | 23.28 | 27.23 |
| CDY16531 | Canola | nucleus | 22.9 | 26.79 |
| KRG91075 | Soybean | nucleus | 22.14 | 24.58 |
| CDY20854 | Canola | nucleus | 22.52 | 24.38 |
| Bra039652.1-P | Field mustard | nucleus | 22.52 | 24.28 |
| CDY61552 | Canola | nucleus | 22.14 | 24.27 |
| KRH35698 | Soybean | nucleus | 22.52 | 23.98 |
| TraesCS4B01G255400.1 | Wheat | nucleus | 25.19 | 23.91 |
| VIT_03s0091g00480.t01 | Wine grape | nucleus | 24.81 | 23.38 |
| AT1G49850.1 | Thale cress | nucleus | 20.99 | 22.0 |
| GSMUA_Achr4P32570_001 | Banana | nucleus | 21.76 | 21.43 |
| PGSC0003DMT400066172 | Potato | nucleus | 23.28 | 21.18 |
| Solyc01g107290.2.1 | Tomato | nucleus | 21.76 | 20.65 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G077700.1 | EnsemblPlantsGene:TraesCS4B01G077700 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF219 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr4B:+:74668315..74671892
Molecular Weight (calculated)
28754.2 Da
IEP (calculated)
9.223
GRAVY (calculated)
-0.448
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MPIAAKLFYY QRRRPPPPPL PEPTEPRSAD SSAARRRVHP IRSAHHRPGY EVLRGSQRER GASSGSITEP TRNVLFSTRQ SCNASNDRLP DAVQQAKERL
101: HQRLRSVDLF PGRRLAAPAV GTIWAGPDLP SECDICTSKD GRLADRTFLF NSRASLSDHK VKQITAETFS DAAVVAPHHL RPVSKVGEGM IEGGVAESSV
201: DCSICLEGCH GASDGLIQLR CKHIFHSACL EQWLQSRADC PYCRAGVVLS YHGKSISSAV RL
101: HQRLRSVDLF PGRRLAAPAV GTIWAGPDLP SECDICTSKD GRLADRTFLF NSRASLSDHK VKQITAETFS DAAVVAPHHL RPVSKVGEGM IEGGVAESSV
201: DCSICLEGCH GASDGLIQLR CKHIFHSACL EQWLQSRADC PYCRAGVVLS YHGKSISSAV RL
001: MQGSYEPKYS LILENPIFTF SYNHHLHPKR KRKKKSMAEE FHLPLNLTEP DQTPTEEDFE ADTTLIDDEY LRYLHYLDSR SNHGVNTFGS YDEIFGLVLG
101: NSSSCTRWLN AGEELPVVEF TAEEMMERGL VVCAICREEL AANERLSELP CRHYYHKECI SNWLSNRNTC PLCRHNVELP NHG
101: NSSSCTRWLN AGEELPVVEF TAEEMMERGL VVCAICREEL AANERLSELP CRHYYHKECI SNWLSNRNTC PLCRHNVELP NHG
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LPW5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.