Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G292000.1 | Wheat | cytosol, nucleus, plastid | 42.24 | 89.47 |
| TraesCS4A01G251800.1 | Wheat | nucleus | 45.34 | 87.95 |
| TraesCS4B01G022000.1 | Wheat | nucleus | 81.68 | 87.67 |
| TraesCS4D01G019900.1 | Wheat | nucleus | 87.89 | 86.81 |
| HORVU4Hr1G003410.3 | Barley | nucleus | 86.65 | 79.04 |
| TraesCS4D01G019600.1 | Wheat | nucleus | 53.11 | 50.29 |
| CDY34012 | Canola | nucleus | 27.95 | 46.63 |
| Os03t0673500-00 | Rice | nucleus | 48.45 | 45.35 |
| GSMUA_Achr10P... | Banana | nucleus | 34.78 | 43.08 |
| TraesCS5D01G415900.1 | Wheat | nucleus | 43.79 | 41.59 |
| TraesCS2D01G256400.1 | Wheat | nucleus | 43.17 | 40.06 |
| VIT_18s0001g08380.t01 | Wine grape | nucleus | 41.93 | 36.49 |
| Solyc04g077210.2.1 | Tomato | nucleus | 40.06 | 36.34 |
| TraesCS4D01G058000.1 | Wheat | nucleus | 40.68 | 36.19 |
| PGSC0003DMT400012712 | Potato | nucleus | 40.06 | 35.83 |
| KRH15482 | Soybean | nucleus | 40.68 | 34.03 |
| KRG88661 | Soybean | nucleus | 40.37 | 33.59 |
| Bra000638.1-P | Field mustard | nucleus | 40.06 | 33.33 |
| KRH61471 | Soybean | nucleus | 37.27 | 33.24 |
| AT4G08150.1 | Thale cress | nucleus | 40.06 | 32.41 |
| CDX83145 | Canola | nucleus | 40.06 | 32.09 |
| TraesCS1D01G075700.1 | Wheat | nucleus | 30.12 | 31.7 |
| TraesCS1D01G075600.1 | Wheat | nucleus | 29.5 | 31.05 |
| CDY68624 | Canola | nucleus | 30.12 | 27.79 |
| TraesCS6D01G134800.1 | Wheat | nucleus | 15.84 | 24.64 |
| TraesCS7D01G501000.1 | Wheat | nucleus | 22.98 | 23.95 |
| TraesCS4D01G341000.1 | Wheat | nucleus | 21.12 | 21.86 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.4 | ncoils:Coil | InterPro:ELK_dom | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_KN_domain | InterPro:Homeobox_dom | InterPro:IPR001356 |
| InterPro:IPR005539 | InterPro:KNOX1 | InterPro:KNOX2 | PFAM:PF03790 | PFAM:PF03791 | PFAM:PF05920 |
| ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR11850 | PANTHER:PTHR11850:SF106 | SMART:SM00389 | SMART:SM01188 |
| SMART:SM01255 | SMART:SM01256 | SUPFAM:SSF46689 | EnsemblPlantsGene:TraesCS4D01G019800 | EnsemblPlants:TraesCS4D01G019800.1 | TIGR:cd00086 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr4D:-:8593129..8598475
Molecular Weight (calculated)
35514.7 Da
IEP (calculated)
6.794
GRAVY (calculated)
-0.723
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRLPLPGGG PRAAANTPFF VAMDQHAAST STSPPEKAPP AAPLPAPEHR GKSSCNRRSS DTIKAKIMSH PLYPALLGAF IDCRKVGAPP EIVGRLSSLV
101: DELQPSSDDM QEQPADPELD QFMETYRDML VMYSQELTRQ IQEANEFLRS AEAHIDSFAL ATGNNYNECG GSSEDEQETG DVAGLPSGEG KQLTSQLLDK
201: YSGYLRSLWR DLSGKKKKSG RLPREACQRL LHWWQLHQGW PYPSEPEKLA LAESTGLDTR QINNWFINQR KRHWRPAPPA MGSRLQHIDA GASTSSSPAV
301: LGMEGQHFTR RSGYPDGGPL RP
101: DELQPSSDDM QEQPADPELD QFMETYRDML VMYSQELTRQ IQEANEFLRS AEAHIDSFAL ATGNNYNECG GSSEDEQETG DVAGLPSGEG KQLTSQLLDK
201: YSGYLRSLWR DLSGKKKKSG RLPREACQRL LHWWQLHQGW PYPSEPEKLA LAESTGLDTR QINNWFINQR KRHWRPAPPA MGSRLQHIDA GASTSSSPAV
301: LGMEGQHFTR RSGYPDGGPL RP
001: MDGMYNFHSA GDYSDKSVLM MSPESLMFPS DYQALLCSSA GENRVSDVFG SDELLSVAVS ALSSEAASIA PEIRRNDDNV SLTVIKAKIA CHPSYPRLLQ
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE
Arabidopsis Description
KNAT6KNOTTED1-like homeobox gene 6 [Source:TAIR;Acc:AT1G23380]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.