Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G173000.1 | Wheat | cytosol | 80.44 | 99.45 |
| TraesCS5B01G165500.2 | Wheat | cytosol | 80.44 | 99.45 |
| Os02t0317400-01 | Rice | cytosol | 76.0 | 93.96 |
| KXG35813 | Sorghum | cytosol | 73.33 | 90.66 |
| Zm00001d020783_P005 | Maize | mitochondrion | 72.0 | 79.8 |
| Solyc02g071170.2.1 | Tomato | plastid | 59.11 | 75.14 |
| PGSC0003DMT400007924 | Potato | cytosol | 58.22 | 74.01 |
| KRH36712 | Soybean | endoplasmic reticulum | 58.67 | 73.74 |
| KRH11718 | Soybean | endoplasmic reticulum | 58.67 | 73.74 |
| PGSC0003DMT400083870 | Potato | cytosol | 58.67 | 72.13 |
| Solyc12g044910.1.1 | Tomato | cytosol | 58.67 | 72.13 |
| TraesCS3A01G356400.1 | Wheat | cytosol | 56.44 | 71.75 |
| CDY36196 | Canola | cytosol | 56.44 | 70.17 |
| PGSC0003DMT400006628 | Potato | cytosol | 57.33 | 70.11 |
| Solyc03g121800.2.1 | Tomato | plastid | 57.33 | 70.11 |
| AT1G60970.1 | Thale cress | cytosol | 55.11 | 70.06 |
| CDX75151 | Canola | cytosol | 56.0 | 69.61 |
| AT4G08520.1 | Thale cress | cytosol | 56.0 | 69.61 |
| CDY44731 | Canola | cytosol | 55.56 | 69.06 |
| CDY41585 | Canola | cytosol | 55.56 | 69.06 |
| VIT_09s0002g01710.t01 | Wine grape | cytosol | 56.0 | 68.85 |
| KRH23291 | Soybean | endoplasmic reticulum | 55.11 | 68.51 |
| KRH44115 | Soybean | cytosol | 54.67 | 68.33 |
| VIT_10s0003g02760.t01 | Wine grape | cytosol | 60.44 | 68.0 |
| CDX73995 | Canola | cytosol | 55.11 | 67.39 |
| Bra001298.1-P | Field mustard | cytosol | 55.11 | 67.39 |
| Bra027107.1-P | Field mustard | cytosol | 52.89 | 67.23 |
| Bra029790.1-P | Field mustard | cytosol | 43.56 | 66.67 |
| TraesCS1A01G286000.1 | Wheat | cytosol | 52.44 | 66.67 |
| CDY41313 | Canola | cytosol | 54.22 | 66.3 |
| CDY22204 | Canola | cytosol | 54.22 | 66.3 |
| Bra037861.1-P | Field mustard | extracellular | 39.56 | 64.49 |
| KRH47095 | Soybean | endoplasmic reticulum | 50.22 | 60.11 |
| CDY07940 | Canola | cytosol | 55.11 | 51.88 |
| Os09t0251450-00 | Rice | extracellular | 18.67 | 51.22 |
| CDY12879 | Canola | mitochondrion | 52.89 | 50.0 |
| CDY44831 | Canola | cytosol, mitochondrion | 51.11 | 49.15 |
| AT3G09800.6 | Thale cress | cytosol | 56.0 | 48.65 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G168700.2 | EnsemblPlantsGene:TraesCS5A01G168700 | Gene3D:3.30.450.60 | InterPro:AP_mu_sigma_su | InterPro:Longin-like_dom_sf | PANTHER:PTHR11043 |
| PANTHER:PTHR11043:SF8 | PFAM:PF01217 | SEG:seg | SUPFAM:SSF64356 | MapMan:22.3.1.4.4 | : |
Description
No Description!
Coordinates
chr5A:+:359696115..359698727
Molecular Weight (calculated)
24704.7 Da
IEP (calculated)
4.576
GRAVY (calculated)
0.224
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEFSKESCP SVKNILLLDS EGKRVAVKYF SDDWPNNASR LTFEKSIFTK TLKTNARSEA EITLLDGYIV VYKFVQDLHF FVTAGDDENE LIIANVLQGF
101: ADSVGLLLRG DVEKRTALEN LDLILLCIDE IIDGGCWASY SCAMSTFCSM FMLYCCLLFI LCPFSGSSHG VSLIYGKSII LETDANTIAG KVATNAADGS
201: VPFSEQTISQ ALATAREHFA RSLLK
101: ADSVGLLLRG DVEKRTALEN LDLILLCIDE IIDGGCWASY SCAMSTFCSM FMLYCCLLFI LCPFSGSSHG VSLIYGKSII LETDANTIAG KVATNAADGS
201: VPFSEQTISQ ALATAREHFA RSLLK
001: MSPDSCPLVK KILLLDSEGK RVAVKYYSDD WPTNAAKLSF EKYVFSKTSK TNARTEAEIT LLDSNIIVYK FAQDLHFFVT GGENENELIL ASVLQGFFDA
101: VALLLRSNVE KMEALENLDL IFLCLDEMVD QGVVLETDPN VIAGKVAMQS TEASGSLSEQ TLTQALATAR EHLARSLLT
101: VALLLRSNVE KMEALENLDL IFLCLDEMVD QGVVLETDPN VIAGKVAMQS TEASGSLSEQ TLTQALATAR EHLARSLLT
Arabidopsis Description
SNARE-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRF9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.