Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 4
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra013872.1-P | |
| Bra040080.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G08520.1 | Bra013872.1-P | AT4G25200.1 | 21798944 |
| AT4G08520.1 | Bra040080.1-P | AT4G32520.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029790.1-P | Field mustard | cytosol | 82.61 | 77.55 |
| CDY36196 | Canola | cytosol | 91.3 | 69.61 |
| CDX75151 | Canola | cytosol | 89.13 | 67.96 |
| AT4G08520.1 | Thale cress | cytosol | 86.96 | 66.3 |
| Bra001298.1-P | Field mustard | cytosol | 83.33 | 62.5 |
| KRH44115 | Soybean | cytosol | 68.84 | 52.78 |
| VIT_09s0002g01710.t01 | Wine grape | cytosol | 69.57 | 52.46 |
| PGSC0003DMT400006628 | Potato | cytosol | 68.12 | 51.09 |
| KRH23291 | Soybean | endoplasmic reticulum | 66.67 | 50.83 |
| Solyc03g121800.2.1 | Tomato | plastid | 67.39 | 50.54 |
| Bra027107.1-P | Field mustard | cytosol | 64.49 | 50.28 |
| Solyc12g044910.1.1 | Tomato | cytosol | 66.67 | 50.27 |
| PGSC0003DMT400083870 | Potato | cytosol | 66.67 | 50.27 |
| Os02t0317400-01 | Rice | cytosol | 64.49 | 48.9 |
| TraesCS5B01G165500.2 | Wheat | cytosol | 64.49 | 48.9 |
| KXG35813 | Sorghum | cytosol | 63.77 | 48.35 |
| TraesCS5D01G173000.1 | Wheat | cytosol | 63.77 | 48.35 |
| Zm00001d020783_P005 | Maize | mitochondrion | 63.77 | 43.35 |
| KRH47095 | Soybean | endoplasmic reticulum | 58.7 | 43.09 |
| Os09t0251450-00 | Rice | extracellular | 23.91 | 40.24 |
| TraesCS5A01G168700.2 | Wheat | cytosol | 64.49 | 39.56 |
Protein Annotations
| EnsemblPlants:Bra037861.1 | EnsemblPlants:Bra037861.1-P | EnsemblPlantsGene:Bra037861 | Gene3D:3.30.450.60 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0005886 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016192 |
| InterPro:AP_mu_sigma_su | InterPro:Longin-like_dom_sf | PANTHER:PTHR11043 | PANTHER:PTHR11043:SF8 | PFAM:PF01217 | SEG:seg |
| SignalP:SignalP-noTM | SUPFAM:SSF64356 | UniParc:UPI00025422B1 | UniProt:M4F9U7 | MapMan:22.3.1.4.4 | : |
Description
AT4G08520 (E=6e-051) | clathrin adaptor complex small chain family protein
Coordinates
chrA09:+:10526613..10527546
Molecular Weight (calculated)
15531.7 Da
IEP (calculated)
4.052
GRAVY (calculated)
0.366
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MYFFVYLYHM LHFLAAEITL LENNIVVYKF AQDLHFFVTG GEDENELILS SVLQGFFDAV ALLLRNNVEK MEALENLDLI FLCLDEMVDQ GMVLETDANV
101: IAGKVAMQSA ETSSSLSEQT LTQAFATARE HLARSLLT
101: IAGKVAMQSA ETSSSLSEQT LTQAFATARE HLARSLLT
001: MAGTNDSCPL VKNILLLDSE GKRVAVKYYS DDWATNASKL AFEKYVFSKT SKTNARTEAE ITLLESNIVV YKFAQDLHFF VTGGENENEL VLSSVLQGFF
101: DAVALLLRNN VEKMEALENL DLIFLCLDEM VDQGMVLETD ANVIAGKVAM QSAEASGSLS EQTLTQALAT AREHLARSLL T
101: DAVALLLRNN VEKMEALENL DLIFLCLDEM VDQGMVLETD ANVIAGKVAM QSAEASGSLS EQTLTQALAT AREHLARSLL T
Arabidopsis Description
Coatomer subunit zeta-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1F4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.