CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89430
EER89431
KXG19616
OQU75612
OQU75930
OQU76071
OQU85385

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08520.1	EER89430	AT4G25200.1	21798944
AT4G08520.1	EER89431	AT4G25200.1	21798944
AT4G08520.1	KXG19616	AT4G25200.1	21798944
AT4G08520.1	OQU75612	AT4G25200.1	21798944
AT4G08520.1	OQU75930	AT4G25200.1	21798944
AT4G08520.1	OQU76071	AT4G25200.1	21798944
AT4G08520.1	OQU85385	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0317400-01	Rice	cytosol	93.96	93.96
TraesCS5D01G173000.1	Wheat	cytosol	90.11	90.11
TraesCS5B01G165500.2	Wheat	cytosol	90.11	90.11
Zm00001d020783_P005	Maize	mitochondrion	96.7	86.7
Solyc02g071170.2.1	Tomato	plastid	77.47	79.66
PGSC0003DMT400007924	Potato	cytosol	76.37	78.53
KRH11718	Soybean	endoplasmic reticulum	74.73	75.98
KRH36712	Soybean	endoplasmic reticulum	74.73	75.98
Solyc12g044910.1.1	Tomato	cytosol	74.18	73.77
PGSC0003DMT400083870	Potato	cytosol	74.18	73.77
TraesCS5A01G168700.2	Wheat	cytosol	90.66	73.33
VIT_09s0002g01710.t01	Wine grape	cytosol	72.53	72.13
CDY36196	Canola	cytosol	71.43	71.82
Solyc03g121800.2.1	Tomato	plastid	72.53	71.74
PGSC0003DMT400006628	Potato	cytosol	72.53	71.74
CDX75151	Canola	cytosol	70.88	71.27
AT4G08520.1	Thale cress	cytosol	70.88	71.27
AT1G60970.1	Thale cress	cytosol	69.23	71.19
KRH23291	Soybean	endoplasmic reticulum	70.33	70.72
CDY44731	Canola	cytosol	70.33	70.72
CDY41585	Canola	cytosol	70.33	70.72
KRH44115	Soybean	cytosol	69.78	70.56
VIT_10s0003g02760.t01	Wine grape	cytosol	75.27	68.5
Bra001298.1-P	Field mustard	cytosol	69.23	68.48
CDX73995	Canola	cytosol	69.23	68.48
Bra027107.1-P	Field mustard	cytosol	66.48	68.36
CDY41313	Canola	cytosol	68.68	67.93
CDY22204	Canola	cytosol	68.68	67.93
Bra029790.1-P	Field mustard	cytosol	54.4	67.35
Bra037861.1-P	Field mustard	extracellular	48.35	63.77
KRH47095	Soybean	endoplasmic reticulum	63.19	61.17
CDY07940	Canola	cytosol	69.23	52.72
Os09t0251450-00	Rice	extracellular	23.08	51.22
CDY12879	Canola	mitochondrion	66.48	50.84
CDY44831	Canola	cytosol, mitochondrion	64.84	50.43
AT3G09800.6	Thale cress	cytosol	70.88	49.81
KXG22166	Sorghum	cytosol	67.58	45.56

Protein Annotations

EnsemblPlants:KXG35813	EnsemblPlantsGene:SORBI_3002G232400	Gene3D:3.30.450.60	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	InterPro:AP_mu_sigma_su	InterPro:Longin-like_dom_sf	PANTHER:PTHR11043
PANTHER:PTHR11043:SF8	PFAM:PF01217	ProteinID:KXG35813	ProteinID:KXG35813.1	ProteinID:KXG35814.1	SUPFAM:SSF64356
UniParc:UPI0002207122	UniProt:A0A1B6QD28	MapMan:22.3.1.4.4	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:62337663..62341549

Molecular Weight (calculated)

19911.7 Da

IEP (calculated)

4.568

GRAVY (calculated)

0.076

Length

182 amino acids

Sequence
(BLAST)

001: MADFSKESCP SVKNILLLDS EGKRVAVKYF SDDWPTNASK LAYEKSVFTK TLKTNARAEA EITLFDGYIV VYKFVHDLHF FVTAGDDENE LILASVLHGF
101: SDSVGLLLRG DVEKRTALEN LDLILLCIDE IVDGGIILET DANTIAGKVA TNAVDGSVPF SEQTISQALA TAREHLARSL LK

Best Arabidopsis Sequence Match ( AT3G09800.1 )
(BLAST)

001: MSPDSCPLVK KILLLDSEGK RVAVKYYSDD WPTNAAKLSF EKYVFSKTSK TNARTEAEIT LLDSNIIVYK FAQDLHFFVT GGENENELIL ASVLQGFFDA
101: VALLLRSNVE KMEALENLDL IFLCLDEMVD QGVVLETDPN VIAGKVAMQS TEASGSLSEQ TLTQALATAR EHLARSLLT

Arabidopsis Description

SNARE-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.