CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89437
CDY03368
CDY23328
CDY39889

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08520.1	CDX89437	AT4G25200.1	21798944
AT4G08520.1	CDY03368	AT4G25200.1	21798944
AT4G08520.1	CDY23328	AT4G32520.1	21798944
AT4G08520.1	CDY39889	AT4G32520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36196	Canola	cytosol	98.34	98.34
AT4G08520.1	Thale cress	cytosol	93.37	93.37
CDY41585	Canola	cytosol	90.61	90.61
CDY44731	Canola	cytosol	90.61	90.61
Bra037861.1-P	Field mustard	extracellular	67.96	89.13
CDX73995	Canola	cytosol	88.95	87.5
CDY22204	Canola	cytosol	88.95	87.5
CDY41313	Canola	cytosol	88.95	87.5
KRH44115	Soybean	cytosol	75.69	76.11
VIT_09s0002g01710.t01	Wine grape	cytosol	76.8	75.96
PGSC0003DMT400006628	Potato	cytosol	75.69	74.46
Solyc03g121800.2.1	Tomato	plastid	75.14	73.91
KRH23291	Soybean	endoplasmic reticulum	72.38	72.38
Solyc12g044910.1.1	Tomato	cytosol	72.38	71.58
PGSC0003DMT400083870	Potato	cytosol	72.38	71.58
Os02t0317400-01	Rice	cytosol	71.27	70.88
KXG35813	Sorghum	cytosol	71.27	70.88
TraesCS5B01G165500.2	Wheat	cytosol	69.61	69.23
TraesCS5D01G173000.1	Wheat	cytosol	69.06	68.68
CDY07940	Canola	cytosol	88.4	66.95
KRH47095	Soybean	endoplasmic reticulum	67.96	65.43
Zm00001d020783_P005	Maize	mitochondrion	72.38	64.53
TraesCS5A01G168700.2	Wheat	cytosol	69.61	56.0
CDY12879	Canola	mitochondrion	70.17	53.36
CDY44831	Canola	cytosol, mitochondrion	67.96	52.56
Os09t0251450-00	Rice	extracellular	18.23	40.24

Protein Annotations

EnsemblPlants:CDX75151	EnsemblPlantsGene:GSBRNA2T00118946001	Gene3D:3.30.450.60	GO:A0A078CDI9	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	InterPro:AP_mu_sigma_su	InterPro:Longin-like_dom_sf
PANTHER:PTHR11043	PANTHER:PTHR11043:SF8	PFAM:PF01217	ProteinID:CDX75151	ProteinID:CDX75151.1	SUPFAM:SSF64356
UniParc:UPI0004EC8651	MapMan:22.3.1.4.4	:	:	:	:

Description

BnaC09g25310D

Coordinates

chrLK031803:-:1018461..1020825

Molecular Weight (calculated)

20084.9 Da

IEP (calculated)

4.334

GRAVY (calculated)

0.014

Length

181 amino acids

Sequence
(BLAST)

001: MSRANDSCPL VKNILLLDSE GKRVAVKYYS DDWTTNAAKL AFEKYVFTKT AKTNARTEAE ITLLENNIVV YKFAQDLHFF VTGGEDENEL ILSSVLQGFF
101: DAVALLFRNN VEKMEALENL DLIFLCLDEM VDQGMVLETD ANVIAGKVAM QSAEASGSLS EQTLTQAFAT AREHLARSLL T

Best Arabidopsis Sequence Match ( AT4G08520.1 )
(BLAST)

001: MAGTNDSCPL VKNILLLDSE GKRVAVKYYS DDWATNASKL AFEKYVFSKT SKTNARTEAE ITLLESNIVV YKFAQDLHFF VTGGENENEL VLSSVLQGFF
101: DAVALLLRNN VEKMEALENL DLIFLCLDEM VDQGMVLETD ANVIAGKVAM QSAEASGSLS EQTLTQALAT AREHLARSLL T

Arabidopsis Description

Coatomer subunit zeta-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1F4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.