CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027107.1-P	Field mustard	cytosol	73.93	97.74
CDY12879	Canola	mitochondrion	97.44	95.8
AT1G60970.1	Thale cress	cytosol	67.95	89.83
Solyc02g071170.2.1	Tomato	plastid	55.98	74.01
PGSC0003DMT400007924	Potato	cytosol	55.56	73.45
KRH11718	Soybean	endoplasmic reticulum	55.13	72.07
KRH36712	Soybean	endoplasmic reticulum	55.13	72.07
VIT_10s0003g02760.t01	Wine grape	cytosol	59.4	69.5
CDY36196	Canola	cytosol	52.99	68.51
CDX75151	Canola	cytosol	52.56	67.96
CDY41585	Canola	cytosol	52.14	67.4
CDY44731	Canola	cytosol	52.14	67.4
CDX73995	Canola	cytosol	52.56	66.85
CDY41313	Canola	cytosol	51.71	65.76
CDY22204	Canola	cytosol	51.71	65.76
KXG35813	Sorghum	cytosol	50.43	64.84
Os02t0317400-01	Rice	cytosol	50.0	64.29
TraesCS5D01G173000.1	Wheat	cytosol	49.57	63.74
TraesCS5B01G165500.2	Wheat	cytosol	49.15	63.19
Zm00001d020783_P005	Maize	mitochondrion	50.85	58.62
CDY07940	Canola	cytosol	52.99	51.88
TraesCS5A01G168700.2	Wheat	cytosol	49.15	51.11
Os09t0251450-00	Rice	extracellular	13.25	37.8

Protein Annotations

EnsemblPlants:CDY44831	EnsemblPlantsGene:GSBRNA2T00080859001	Gene3D:3.30.450.60	GO:A0A078I4N0	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	InterPro:AP_mu_sigma_su	InterPro:Longin-like_dom_sf
PANTHER:PTHR11043	PANTHER:PTHR11043:SF8	PFAM:PF01217	ProteinID:CDY44831	ProteinID:CDY44831.1	SUPFAM:SSF64356
UniParc:UPI0004EDD1DB	UniProt:A0A078I4N0	MapMan:22.3.1.4.4	:	:	:

Description

BnaCnng11870DBnaCnng11870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I4N0]

Coordinates

chrLK032602:+:203490..205540

Molecular Weight (calculated)

26240.5 Da

IEP (calculated)

4.702

GRAVY (calculated)

-0.089

Length

234 amino acids

Sequence
(BLAST)

001: MWRLSVGGRI FALLTTNKIW CYHNKLESDI YNALEKAQRE RDLLFQVLEL SPPISSPLAM ELPPKVKNIL LLDSEGKRIA AKYYSGDWPT NTAKEAFEKA
101: VFSKTQKTNA RTEVEVTALE NNIIVYKFVQ DLHFFVTGGE EENELVLASL LLFDAVNLLL RGNADKREAL DNLDLIFLCF DEIIDGGIVL ETDANVIAEK
201: AGINSIDPNA PLSEQTISQA LATAREHLTR SLMK

Best Arabidopsis Sequence Match ( AT1G60970.1 )
(BLAST)

001: MELPPKVKNI LLLDSEGKRV AVKYYSDDWP TNSAQEAFEK SVFTKTQKTN ARTEVEVTAL ENNIVVYKFV QDLHFFVTGG EEENELILAS VLEGLFDAVT
101: LLLRSNVDKR EALDNLDLIF LSFDEIIDGG IVLETDANVI AGKAGINSTD PNAPLSEQTI SQALATAREH LTRSLMK

Arabidopsis Description

Coatomer subunit zeta-1 [Source:UniProtKB/Swiss-Prot;Acc:Q940S5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.