CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
cytosol 3
plasma membrane 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11718	Soybean	endoplasmic reticulum	98.88	98.88
Solyc02g071170.2.1	Tomato	plastid	81.56	82.49
PGSC0003DMT400007924	Potato	cytosol	81.01	81.92
VIT_10s0003g02760.t01	Wine grape	cytosol	86.03	77.0
Os02t0317400-01	Rice	cytosol	77.09	75.82
AT1G60970.1	Thale cress	cytosol	74.3	75.14
KXG35813	Sorghum	cytosol	75.98	74.73
Bra027107.1-P	Field mustard	cytosol	73.74	74.58
KRH44115	Soybean	cytosol	74.3	73.89
TraesCS5B01G165500.2	Wheat	cytosol	73.74	72.53
TraesCS5D01G173000.1	Wheat	cytosol	73.18	71.98
KRH23291	Soybean	endoplasmic reticulum	72.63	71.82
Zm00001d020783_P005	Maize	mitochondrion	76.54	67.49
KRH47095	Soybean	endoplasmic reticulum	66.48	63.3
TraesCS5A01G168700.2	Wheat	cytosol	73.74	58.67
CDY12879	Canola	mitochondrion	73.74	55.46
CDY44831	Canola	cytosol, mitochondrion	72.07	55.13
Os09t0251450-00	Rice	extracellular	21.23	46.34

Protein Annotations

EntrezGene:100527022	MapMan:22.3.1.4.4	Gene3D:3.30.450.60	EMBL:ACUP02005388	InterPro:AP_mu_sigma_su	EMBL:BT091830
UniProt:C6T321	ncoils:Coil	EnsemblPlantsGene:GLYMA_09G019500	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	EnsemblPlants:KRH36712	ProteinID:KRH36712	ProteinID:KRH36712.1
InterPro:Longin-like_dom_sf	PFAM:PF01217	PANTHER:PTHR11043	PANTHER:PTHR11043:SF8	SUPFAM:SSF64356	UniParc:UPI0001B15305

Description

hypothetical protein

Coordinates

chr9:+:1521098..1523942

Molecular Weight (calculated)

19751.5 Da

IEP (calculated)

4.480

GRAVY (calculated)

-0.023

Length

179 amino acids

Sequence
(BLAST)

001: MSHETCPSVK NVLLLDSDGK RVAVKYFSED WATNSAKENF EKVVFNKTQK TNARTEAEIA MFENNIVVYK FVQDLHFFVT GGDYENELIL ATVLQAFFDS
101: VGLLLRGNVD KKEALENLDL ILLCIDEIVD GGIILETDPN VIAGKVASNS IDSGAPLSEQ TLSQALATAR EHLARSLLK

Best Arabidopsis Sequence Match ( AT3G09800.1 )
(BLAST)

001: MSPDSCPLVK KILLLDSEGK RVAVKYYSDD WPTNAAKLSF EKYVFSKTSK TNARTEAEIT LLDSNIIVYK FAQDLHFFVT GGENENELIL ASVLQGFFDA
101: VALLLRSNVE KMEALENLDL IFLCLDEMVD QGVVLETDPN VIAGKVAMQS TEASGSLSEQ TLTQALATAR EHLARSLLT

Arabidopsis Description

SNARE-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.