Factsheet for Solyc02g071170.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 2
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007924	Potato	cytosol	98.31	98.31
KRH11718	Soybean	endoplasmic reticulum	82.49	81.56
KRH36712	Soybean	endoplasmic reticulum	82.49	81.56
KXG35813	Sorghum	cytosol	79.66	77.47
VIT_10s0003g02760.t01	Wine grape	cytosol	87.01	77.0
Os02t0317400-01	Rice	cytosol	79.1	76.92
AT1G60970.1	Thale cress	cytosol	76.84	76.84
Bra027107.1-P	Field mustard	cytosol	76.27	76.27
Solyc03g121800.2.1	Tomato	plastid	77.97	75.0
Solyc12g044910.1.1	Tomato	cytosol	77.4	74.86
TraesCS5D01G173000.1	Wheat	cytosol	74.58	72.53
TraesCS5B01G165500.2	Wheat	cytosol	74.58	72.53
Zm00001d020783_P005	Maize	mitochondrion	79.1	68.97
TraesCS5A01G168700.2	Wheat	cytosol	75.14	59.11
CDY12879	Canola	mitochondrion	76.27	56.72
CDY44831	Canola	cytosol, mitochondrion	74.01	55.98
Os09t0251450-00	Rice	extracellular	22.03	47.56

Protein Annotations

EnsemblPlants:Solyc02g071170.2.1	EnsemblPlantsGene:Solyc02g071170.2	Gene3D:3.30.450.60	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	InterPro:AP_mu_sigma_su	InterPro:Longin-like_dom_sf	PANTHER:PTHR11043
PANTHER:PTHR11043:SF8	PFAM:PF01217	SEG:seg	SUPFAM:SSF64356	UniParc:UPI0002768BFD	UniProt:K4B893
MapMan:22.3.1.4.4	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:40657876..40662190

Molecular Weight (calculated)

19369.1 Da

IEP (calculated)

4.327

GRAVY (calculated)

0.063

Length

177 amino acids

Sequence
(BLAST)

001: MEICPSIKNI LLLDSEGKRV AVNYYSDDWP TNAAKEAFEK AVFAKTQKTN ARAEAEITMF DNYIVVYKFA QDLHFFVTGS DNENEIILAS VLQGFFDAVG
101: ILLRGNVEKK EALENLDLIL LCLDEIVDGG IVLETDANVI AGKVASNSVD SGAPLSEQTI SQALATAREH LARSLLK

Best Arabidopsis Sequence Match ( AT1G60970.1 )
(BLAST)

001: MELPPKVKNI LLLDSEGKRV AVKYYSDDWP TNSAQEAFEK SVFTKTQKTN ARTEVEVTAL ENNIVVYKFV QDLHFFVTGG EEENELILAS VLEGLFDAVT
101: LLLRSNVDKR EALDNLDLIF LSFDEIIDGG IVLETDANVI AGKAGINSTD PNAPLSEQTI SQALATAREH LTRSLMK

Arabidopsis Description

Coatomer subunit zeta-1 [Source:UniProtKB/Swiss-Prot;Acc:Q940S5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.