CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
cytosol 3
plasma membrane 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36712	Soybean	endoplasmic reticulum	98.88	98.88
Solyc02g071170.2.1	Tomato	plastid	81.56	82.49
PGSC0003DMT400007924	Potato	cytosol	81.01	81.92
VIT_10s0003g02760.t01	Wine grape	cytosol	86.03	77.0
Os02t0317400-01	Rice	cytosol	76.54	75.27
AT1G60970.1	Thale cress	cytosol	74.3	75.14
KXG35813	Sorghum	cytosol	75.98	74.73
Bra027107.1-P	Field mustard	cytosol	73.74	74.58
KRH44115	Soybean	cytosol	74.86	74.44
TraesCS5B01G165500.2	Wheat	cytosol	73.74	72.53
KRH23291	Soybean	endoplasmic reticulum	73.18	72.38
TraesCS5D01G173000.1	Wheat	cytosol	73.18	71.98
Zm00001d020783_P005	Maize	mitochondrion	76.54	67.49
KRH47095	Soybean	endoplasmic reticulum	67.04	63.83
TraesCS5A01G168700.2	Wheat	cytosol	73.74	58.67
CDY12879	Canola	mitochondrion	73.74	55.46
CDY44831	Canola	cytosol, mitochondrion	72.07	55.13
Os09t0251450-00	Rice	extracellular	21.79	47.56

Protein Annotations

MapMan:22.3.1.4.4	Gene3D:3.30.450.60	EntrezGene:547467	EMBL:AB040543	EMBL:ACUP02009231	InterPro:AP_mu_sigma_su
ncoils:Coil	EnsemblPlantsGene:GLYMA_15G125800	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
GO:GO:0016020	GO:GO:0016192	EnsemblPlants:KRH11718	ProteinID:KRH11718	ProteinID:KRH11718.1	InterPro:Longin-like_dom_sf
PFAM:PF01217	PANTHER:PTHR11043	PANTHER:PTHR11043:SF8	UniProt:Q9MAZ1	SUPFAM:SSF64356	UniParc:UPI00000A73DC

Description

hypothetical protein

Coordinates

chr15:+:9966956..9969650

Molecular Weight (calculated)

19791.6 Da

IEP (calculated)

4.480

GRAVY (calculated)

-0.044

Length

179 amino acids

Sequence
(BLAST)

001: MSHETCPSVK NVLLLDSDGK RVAVKYFSED WPTNSAKENF EKVVFNKTQK TNARTEAEIA MFENNIVLYK FVQDLHFFVT GGDYENELIL ATVLQAFFDS
101: VGLLLRGNVD KKEALENLDL ILLCIDEIVD GGIILETDPN VIAGKVASNS IDSGAPLSEQ TLSQALATAR EHLARSLLK

Best Arabidopsis Sequence Match ( AT3G09800.1 )
(BLAST)

001: MSPDSCPLVK KILLLDSEGK RVAVKYYSDD WPTNAAKLSF EKYVFSKTSK TNARTEAEIT LLDSNIIVYK FAQDLHFFVT GGENENELIL ASVLQGFFDA
101: VALLLRSNVE KMEALENLDL IFLCLDEMVD QGVVLETDPN VIAGKVAMQS TEASGSLSEQ TLTQALATAR EHLARSLLT

Arabidopsis Description

SNARE-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.