CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH07754
KRH11116
KRH11117
KRH21130
KRH23958
KRH26204
KRH39841

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08520.1	KRH23958	AT4G25200.1	21798944
AT4G08520.1	KRH39841	AT4G25200.1	21798944
AT4G08520.1	KRH07754	AT4G32520.1	21798944
AT4G08520.1	KRH11116	AT4G32520.1	21798944
AT4G08520.1	KRH11117	AT4G32520.1	21798944
AT4G08520.1	KRH21130	AT4G32520.1	21798944
AT4G08520.1	KRH26204	AT4G32520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23291	Soybean	endoplasmic reticulum	91.11	90.61
KRH47095	Soybean	endoplasmic reticulum	90.0	86.17
VIT_09s0002g01710.t01	Wine grape	cytosol	81.67	80.33
Solyc03g121800.2.1	Tomato	plastid	80.0	78.26
PGSC0003DMT400006628	Potato	cytosol	78.89	77.17
CDX75151	Canola	cytosol	76.11	75.69
CDY36196	Canola	cytosol	76.11	75.69
Solyc12g044910.1.1	Tomato	cytosol	76.67	75.41
PGSC0003DMT400083870	Potato	cytosol	76.67	75.41
KRH11718	Soybean	endoplasmic reticulum	74.44	74.86
KRH36712	Soybean	endoplasmic reticulum	73.89	74.3
AT4G08520.1	Thale cress	cytosol	73.89	73.48
CDY41585	Canola	cytosol	73.33	72.93
CDY44731	Canola	cytosol	73.33	72.93
CDX73995	Canola	cytosol	73.33	71.74
Bra001298.1-P	Field mustard	cytosol	73.33	71.74
CDY22204	Canola	cytosol	72.78	71.2
CDY41313	Canola	cytosol	72.78	71.2
Bra029790.1-P	Field mustard	cytosol	57.78	70.75
KXG35813	Sorghum	cytosol	70.56	69.78
Os02t0317400-01	Rice	cytosol	70.56	69.78
Bra037861.1-P	Field mustard	extracellular	52.78	68.84
TraesCS5D01G173000.1	Wheat	cytosol	68.89	68.13
TraesCS5B01G165500.2	Wheat	cytosol	68.33	67.58
Zm00001d020783_P005	Maize	mitochondrion	71.67	63.55
CDY07940	Canola	cytosol	72.78	54.81
TraesCS5A01G168700.2	Wheat	cytosol	68.33	54.67
AT3G09800.6	Thale cress	cytosol	75.56	52.51
Os09t0251450-00	Rice	extracellular	19.44	42.68

Protein Annotations

EntrezGene:100775726	MapMan:22.3.1.4.4	Gene3D:3.30.450.60	EntrezGene:547466	EMBL:AB040040	EMBL:ACUP02004135
EMBL:ACUP02004908	InterPro:AP_mu_sigma_su	EMBL:BT089454	EnsemblPlantsGene:GLYMA_08G190800	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	EnsemblPlants:KRH44115	ProteinID:KRH44115
ProteinID:KRH44115.1	ProteinID:KRH47094.1	InterPro:Longin-like_dom_sf	PFAM:PF01217	PANTHER:PTHR11043	PANTHER:PTHR11043:SF8
UniProt:Q9MAZ9	SUPFAM:SSF64356	UniParc:UPI00000AB223	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:-:15346413..15349774

Molecular Weight (calculated)

20086.1 Da

IEP (calculated)

4.480

GRAVY (calculated)

0.003

Length

180 amino acids

Sequence
(BLAST)

001: MASQGLCPSI KNILLLDSEG KRVAVKYYSD DWPTNNAKLA FEKFVFTKTV KTNARTEAEV TLLENNIIIY KFVQDLHFFV TGGEDENELI LASVLQGFFD
101: AVTLLLRSNV DKREALENLD LILLCLDEIV DGGMILETNG PLIAEKVTSH SLDADAPLSE QTLTQAWATA REHLTRTLLK

Best Arabidopsis Sequence Match ( AT1G60970.1 )
(BLAST)

001: MELPPKVKNI LLLDSEGKRV AVKYYSDDWP TNSAQEAFEK SVFTKTQKTN ARTEVEVTAL ENNIVVYKFV QDLHFFVTGG EEENELILAS VLEGLFDAVT
101: LLLRSNVDKR EALDNLDLIF LSFDEIIDGG IVLETDANVI AGKAGINSTD PNAPLSEQTI SQALATAREH LTRSLMK

Arabidopsis Description

Coatomer subunit zeta-1 [Source:UniProtKB/Swiss-Prot;Acc:Q940S5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.