CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 3
plasma membrane 1
nucleus 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH07754
KRH11116
KRH11117
KRH21130
KRH23958
KRH26204
KRH39841

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08520.1	KRH23958	AT4G25200.1	21798944
AT4G08520.1	KRH39841	AT4G25200.1	21798944
AT4G08520.1	KRH07754	AT4G32520.1	21798944
AT4G08520.1	KRH11116	AT4G32520.1	21798944
AT4G08520.1	KRH11117	AT4G32520.1	21798944
AT4G08520.1	KRH21130	AT4G32520.1	21798944
AT4G08520.1	KRH26204	AT4G32520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44115	Soybean	cytosol	90.61	91.11
KRH47095	Soybean	endoplasmic reticulum	80.66	77.66
Solyc03g121800.2.1	Tomato	plastid	78.45	77.17
VIT_09s0002g01710.t01	Wine grape	cytosol	77.9	77.05
PGSC0003DMT400006628	Potato	cytosol	77.35	76.09
Solyc12g044910.1.1	Tomato	cytosol	75.69	74.86
PGSC0003DMT400083870	Potato	cytosol	75.69	74.86
KRH11718	Soybean	endoplasmic reticulum	72.38	73.18
CDY36196	Canola	cytosol	72.93	72.93
CDY41585	Canola	cytosol	72.93	72.93
CDY44731	Canola	cytosol	72.93	72.93
KRH36712	Soybean	endoplasmic reticulum	71.82	72.63
AT4G08520.1	Thale cress	cytosol	72.38	72.38
CDX75151	Canola	cytosol	72.38	72.38
Bra029790.1-P	Field mustard	cytosol	58.01	71.43
CDX73995	Canola	cytosol	71.82	70.65
Bra001298.1-P	Field mustard	cytosol	71.82	70.65
KXG35813	Sorghum	cytosol	70.72	70.33
CDY41313	Canola	cytosol	71.27	70.11
CDY22204	Canola	cytosol	71.27	70.11
Os02t0317400-01	Rice	cytosol	70.17	69.78
TraesCS5D01G173000.1	Wheat	cytosol	69.06	68.68
TraesCS5B01G165500.2	Wheat	cytosol	68.51	68.13
Bra037861.1-P	Field mustard	extracellular	50.83	66.67
Zm00001d020783_P005	Maize	mitochondrion	71.27	63.55
TraesCS5A01G168700.2	Wheat	cytosol	68.51	55.11
CDY07940	Canola	cytosol	71.27	53.97
AT3G09800.6	Thale cress	cytosol	72.93	50.97
Os09t0251450-00	Rice	extracellular	19.34	42.68

Protein Annotations

EMBL:ACUP02008460	EnsemblPlants:KRH23291	EnsemblPlantsGene:GLYMA_13G348700	EntrezGene:100817023	Gene3D:3.30.450.60	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	InterPro:AP_mu_sigma_su
InterPro:Longin-like_dom_sf	PANTHER:PTHR11043	PANTHER:PTHR11043:SF8	PFAM:PF01217	ProteinID:KRH23291	ProteinID:KRH23291.1
SEG:seg	SUPFAM:SSF64356	UniParc:UPI000233B09B	UniProt:I1M5A9	MapMan:22.3.1.4.4	:

Description

hypothetical protein

Coordinates

chr13:+:43877143..43879889

Molecular Weight (calculated)

20155.1 Da

IEP (calculated)

4.536

GRAVY (calculated)

-0.004

Length

181 amino acids

Sequence
(BLAST)

001: MASYGSCPSI KNILLLDSEG KRVAVKYFSD DWPTNNSKIA FEKFVFSKTV KTNARTEAEI TLLDNNIIIY KFVQDLHFFV TGGDDANEII LASVLQGFFD
101: AITLLLRNNV DKREALENLD LILLCLDEIV DGGMILETNG PLIAEKVTSH SMDGAESPLS EQTLTQAWAT AREHLTRTLL K

Best Arabidopsis Sequence Match ( AT4G08520.1 )
(BLAST)

001: MAGTNDSCPL VKNILLLDSE GKRVAVKYYS DDWATNASKL AFEKYVFSKT SKTNARTEAE ITLLESNIVV YKFAQDLHFF VTGGENENEL VLSSVLQGFF
101: DAVALLLRNN VEKMEALENL DLIFLCLDEM VDQGMVLETD ANVIAGKVAM QSAEASGSLS EQTLTQALAT AREHLARSLL T

Arabidopsis Description

Coatomer subunit zeta-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1F4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.