CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH07754
KRH11116
KRH11117
KRH21130
KRH23549
KRH26204
KRH44417
KRH47491

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32520.1	KRH23549	AT3G15660.1	21798944
AT4G32520.1	KRH44417	AT3G15660.1	21798944
AT4G32520.1	KRH47491	AT3G15660.1	21798944
AT4G32520.1	KRH07754	AT4G32520.1	21798944
AT4G32520.1	KRH11116	AT4G32520.1	21798944
AT4G32520.1	KRH11117	AT4G32520.1	21798944
AT4G32520.1	KRH21130	AT4G32520.1	21798944
AT4G32520.1	KRH26204	AT4G32520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	70.49	45.26
KRH21130	Soybean	plastid	95.49	43.47
KRH64759	Soybean	cytosol, peroxisome	18.03	42.31
Solyc08g065490.2.1	Tomato	nucleus, plastid	82.38	38.36
Solyc12g095930.1.1	Tomato	plastid	81.56	37.76
VIT_04s0008g00770.t01	Wine grape	plastid	80.33	37.12
Bra040080.1-P	Field mustard	plastid	79.51	36.67
AT4G32520.1	Thale cress	plastid	77.87	35.92
CDY39889	Canola	plastid	79.51	33.45
CDY23328	Canola	golgi, plasma membrane	79.51	31.29
KRH72501	Soybean	mitochondrion	59.84	28.4
KRH16896	Soybean	mitochondrion	59.02	28.4
KRH18830	Soybean	cytosol, peroxisome, plastid	14.75	27.91
KRH58850	Soybean	cytosol	54.51	27.77
KRH45493	Soybean	mitochondrion	56.56	26.64
KRG99502	Soybean	mitochondrion	56.56	26.64
KRH39500	Soybean	mitochondrion	54.92	25.92
KRH42751	Soybean	endoplasmic reticulum, nucleus	56.15	23.95
KRH53150	Soybean	cytosol, nucleus, peroxisome, plastid	49.18	21.9
KRH44066	Soybean	plastid	49.18	21.2
KRH26369	Soybean	cytosol	48.77	21.14
KRH64758	Soybean	cytosol	30.74	15.06
KRH26204	Soybean	cytosol	1.64	2.01
KRH07754	Soybean	cytosol, nucleus, peroxisome	0.82	0.93
PGSC0003DMT400002684	Potato	plastid	0.0	0.0
KRH11117	Soybean	plastid	0.0	0.0

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	Gene3D:3.40.640.10
Gene3D:3.90.1150.10	MapMan:35.1	UniProt:A0A0R0FY73	EMBL:ACUP02009184	EnsemblPlantsGene:GLYMA_15G089900	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0030170	InterPro:IPR015421	InterPro:IPR015422	EnsemblPlants:KRH11116
ProteinID:KRH11116	ProteinID:KRH11116.1	PFAM:PF00464	ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF20
MetaCyc:PWY-1622	MetaCyc:PWY-181	MetaCyc:PWY-2161	MetaCyc:PWY-2201	MetaCyc:PWY-3661	MetaCyc:PWY-3661-1
MetaCyc:PWY-3841	MetaCyc:PWY-5497	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
InterPro:Ser_HO-MeTrfase_PLP_BS	UniParc:UPI0006EDC196	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:6920290..6922354

Molecular Weight (calculated)

26208.7 Da

IEP (calculated)

7.613

GRAVY (calculated)

-0.027

Length

244 amino acids

Sequence
(BLAST)

001: MAHISGLVAA SVLANPFEYC DIVTTTTHKS LRGPRGGMIF FKKDTVHGVD LEPAINNAVF PGLQGGPHNH TIGGLAVCLK YAQSPEFKNY QNQVVANCKA
101: LAQQLIEHGY KLVSGGSDNH LVLVDLRPSG LDGARVEKIL DMASITLNKN SVPDDKSALV PGGIRIGTPA MTTRGLGEKE FSLIADFLHE GVQICLEAKS
201: LVSGTKLQDF LKFVSSSEFP LGEKISELRR KVEALTTQYP IPGV

Best Arabidopsis Sequence Match ( AT4G32520.1 )
(BLAST)

001: MQACCGGNSM ASLQQPGRVQ GSVFPPIMPP VTKFSQQLKF NISKPFRSSF LKRNLVSEMR ASSVSLPNVE ISSKEIPFED YGLGEVDPEV RTIITKEKDR
101: QFRSLELIAS ENFTSRAVME AVGSCLTNKY SEGLPGKRYY GGNEYIDQLE TLCQNRALAA FRLDSTKWGV NVQPLSGSPA NFAVYTAILS PHDRIMGLDL
201: PHGGHLSHGF MTAKRRVSGT SIYFESMPYR LDESTGIVDY DMLEKTATLF RPKLIIAGAS AYSRDFDYPR MRKIADSVGA FLMMDMAHIS GLVAASVVAD
301: PFEYCDIVTT TTHKSLRGPR GGMIFFRKDP INGVDLESAV NNAVFPGLQG GPHNHTIGGL AVCLKHAQSP EFKAYQKRVV SNCRALANRL VELGFKLVSG
401: GSDNHLVLVD LRPMGMDGAR VEKILDMASI TLNKNSVPGD KSALVPGGIR IGSPAMTTRG LSEKDFVVVA DFIKEGVEIT MEAKKAAPGS KLQDFNKFVT
501: SPEFPLKERV KSLKERVETF TSRFPIPGV

Arabidopsis Description

SHM3Serine hydroxymethyltransferase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94JQ3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.