CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
peroxisome 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11116	Soybean	cytosol	27.91	14.75
KRH64758	Soybean	cytosol	52.71	13.65
KRH53150	Soybean	cytosol, nucleus, peroxisome, plastid	54.26	12.77
VIT_00s0211g00080.t01	Wine grape	cytosol	17.83	12.64
KRH26369	Soybean	cytosol	52.71	12.08
KRH44066	Soybean	plastid	52.71	12.01
KRH58850	Soybean	cytosol	41.09	11.06
KRH42751	Soybean	endoplasmic reticulum, nucleus	41.86	9.44
KRH16896	Soybean	mitochondrion	34.88	8.88
KRH72501	Soybean	mitochondrion	34.88	8.75
KRH39500	Soybean	mitochondrion	34.88	8.7
KRG99502	Soybean	mitochondrion	34.88	8.69
KRH45493	Soybean	mitochondrion	34.88	8.69
KRH21130	Soybean	plastid	35.66	8.58
KRH26204	Soybean	cytosol	6.98	4.52
Zm00001d009738_P001	Maize	cytosol, plastid	6.2	3.69
KRH07754	Soybean	cytosol, nucleus, peroxisome	5.43	3.24
KRH64759	Soybean	cytosol, peroxisome	2.33	2.88
KRH11117	Soybean	plastid	2.33	1.32

Protein Annotations

EMBL:ACUP02008135	EnsemblPlants:KRH18830	EnsemblPlantsGene:GLYMA_13G084900	Gene3D:3.90.1150.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR015422	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1
PANTHER:PTHR11680	PANTHER:PTHR11680:SF7	PFAM:PF00464	ProteinID:KRH18830	ProteinID:KRH18830.1	SEG:seg
SUPFAM:SSF53383	TMHMM:TMhelix	UniParc:UPI0006EE0186	UniProt:A0A0R0GK79	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr13:+:19610372..19611106

Molecular Weight (calculated)

14461.5 Da

IEP (calculated)

7.859

GRAVY (calculated)

-0.104

Length

129 amino acids

Sequence
(BLAST)

001: MGSGKSRDIS SLDYDYLVRM FSLDCEDSSC PFEEEKINFA LYPSLQGGLR NNHTAVPATA LEQGKVPMYK PYIQQVKKSA LASALLKRKC RLATNETHNH
101: LLLCDLTILG LIGNLVFFYS TFCNMSQTL

Best Arabidopsis Sequence Match ( AT1G22020.1 )
(BLAST)

001: MDRIAQSDLS LGFGSSHALP LPHPPRIPIA DDSITLQIDS SFRPSSNPMP PVPLQLLEQR FDVTGSCSRV VEEDDEVVGD NDDDDQREEE QFILLGHPMK
101: LKRGRGGNSY SLASSSPCKR FVVDSGIESR RAVVRAWGNQ SIEEADPEIH EFMEKEKQRQ FRGIELIASE NFVCRAVMEA LGSHLTNKYS EGMPGARYYT
201: GNQYIDQIEI LCQERALAAF GLNHEKWGVN VQPYSCTSAN FAVFTGLLMP GERIMGLDSP SGGHMSHGYY TPGGKKVSGA SIFFESFPYK VDPRTGYIDY
301: DKLEEKALDY RPKILICGGS SYPRDWEFPR FRHIADKCGA VLMFDMAQIS GLVAAKESPN PFDYCDIVTS TTHKSLRGPR GGIIFYKRGL KPKKQSINLN
401: HCESNIQYDF EEKINFSVFP SLQGGPHNNH IAALAIALKQ AASPEYKLYM RQVKKNAKAL ASALISRKCK LITGGTDNHL LLWDLTPLGL TGKVYEKVCE
501: MCHITVNKVA IFSENGVISP GGVRIGSPAM TSRGCLEPEF ETMADFLYRA AQIASAAQRE HGKLQKEPLK SIYHCKEIAD LRNQVEAFAT QFAMPAFDM

Arabidopsis Description

SHM6Serine hydroxymethyltransferase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.