CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45493	Soybean	mitochondrion	98.07	98.07
PGSC0003DMT400078666	Potato	mitochondrion	90.93	90.93
Solyc02g091560.2.1	Tomato	plastid	90.73	90.73
Os03t0738400-01	Rice	mitochondrion	87.26	88.11
OQU91027	Sorghum	mitochondrion	85.71	86.55
TraesCS4A01G246100.1	Wheat	mitochondrion	84.94	86.27
TraesCS4B01G069300.1	Wheat	mitochondrion	84.94	86.27
TraesCS4D01G068100.1	Wheat	mitochondrion	84.94	86.27
KRH39500	Soybean	mitochondrion	85.91	86.07
KRH16896	Soybean	mitochondrion	83.78	85.6
KRH72501	Soybean	mitochondrion	84.56	85.21
HORVU4Hr1G011500.1	Barley	plasma membrane	85.14	82.74
KRH26204	Soybean	cytosol	22.2	57.79
KRH07754	Soybean	cytosol, nucleus, peroxisome	23.94	57.41
KRH11116	Soybean	cytosol	26.64	56.56
KRH58850	Soybean	cytosol	52.12	56.37
KRH21130	Soybean	plastid	55.79	53.92
KRH11117	Soybean	plastid	22.39	51.1
Zm00001d009738_P001	Maize	cytosol, plastid	20.85	49.77
KRH42751	Soybean	endoplasmic reticulum, nucleus	53.47	48.43
KRH53150	Soybean	cytosol, nucleus, peroxisome, plastid	48.26	45.62
KRH26369	Soybean	cytosol	48.65	44.76
KRH44066	Soybean	plastid	48.84	44.7
KRH64758	Soybean	cytosol	39.96	41.57
KRH64759	Soybean	cytosol, peroxisome	8.11	40.38
KRH18830	Soybean	cytosol, peroxisome, plastid	8.69	34.88

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
EntrezGene:100499635	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	EMBL:ACUP02011090	UniProt:C6ZJZ0	EMBL:EU912423
EnsemblPlantsGene:GLYMA_18G150000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488	GO:GO:0006545
GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0032259	GO:GO:0035999	InterPro:IPR015421
InterPro:IPR015422	EnsemblPlants:KRG99502	ProteinID:KRG99502	ProteinID:KRG99502.1	HAMAP:MF_00051	PFAM:PF00464
PIRSF:PIRSF000412	ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF29	MetaCyc:PWY-1622	MetaCyc:PWY-181
MetaCyc:PWY-2161	MetaCyc:PWY-2201	MetaCyc:PWY-3661	MetaCyc:PWY-3661-1	MetaCyc:PWY-3841	MetaCyc:PWY-5497
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS
UniParc:UPI0001B06DF7	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:27237675..27243626

Molecular Weight (calculated)

57380.9 Da

IEP (calculated)

9.171

GRAVY (calculated)

-0.291

Length

518 amino acids

Sequence
(BLAST)

001: MAMAMALRRL SSSIDKPLRP LFNAGSLYYK SSLPDEAVYD KERPGVTWPK QLNASLEVVD PEIADIIELE KARQWKGLEL IPSENFTSVS VMQAVGSVMT
101: NKYSEGYPGA RYYGGNEYID MAETLCQKRA LEAFRLDPAK WGVNVQPLSG SPANFHVYTA LLKPHERIMA LDLPHGGHLS HGYQTDTKKI SAVSIFFETM
201: PYRLNESTGY IDYDQMEKSA TLFRPKLIVA GASAYARLYD YERVRKVCDK QKAILLADMA HISGLVAAGV IPSPFDYADV VTTTTHKSLR GPRGAMIFYR
301: KGVKEINKQG KELLYDYEDK INQAVFPGLQ GGPHNHTITG LAVALKQATT PEYRAYQEQV LSNSFKFAQA LSERGYELVS GGTENHLVLV NLKNKGIDGS
401: RVEKVLEAVH IAANKNTVPG DVSAMVPGGI RMGTPALTSR GFVEEDFVKV AEFFDAAVKL AVKIKGQSKG TKLKDFLATI QSSSTFQSEI AKLRHDVEDY
501: AKQFPTIGFE KATMKYKN

Best Arabidopsis Sequence Match ( AT4G37930.1 )
(BLAST)

001: MAMAMALRRL SSSIDKPIRP LIRSTSCYMS SLPSEAVDEK ERSRVTWPKQ LNAPLEEVDP EIADIIEHEK ARQWKGLELI PSENFTSVSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFRLDPEKW GVNVQPLSGS PANFHVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDESTGYI DYDQMEKSAT LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAANVI PSPFDYADVV TTTTHKSLRG PRGAMIFFRK
301: GVKEINKQGK EVLYDFEDKI NQAVFPGLQG GPHNHTITGL AVALKQATTS EYKAYQEQVL SNSAKFAQTL MERGYELVSG GTDNHLVLVN LKPKGIDGSR
401: VEKVLEAVHI ASNKNTVPGD VSAMVPGGIR MGTPALTSRG FVEEDFAKVA EYFDKAVTIA LKVKSEAQGT KLKDFVSAME SSSTIQSEIA KLRHEVEEFA
501: KQFPTIGFEK ETMKYKN

Arabidopsis Description

SHM1Serine hydroxymethyltransferase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.