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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • mitochondrion 9
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion
BaCelLo:mitochondrion
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:mitochondrion
 mitochondrion: 14983062
cytosol: 22313117
extracellular: 22313117
msms PMID: 22313117 doi
S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto
Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.
msms PMID: 14983062 doi
Y Balmer, WH Vensel, CK Tanaka, WJ Hurkman, E Gelhaye, N Rouhier, JP Jacquot, W Manieri, P Schürmann, M Droux, BB Buchanan
Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc02g091560.2.1 Tomato plastid 98.65 98.65
KRH45493 Soybean mitochondrion 91.31 91.31
KRG99502 Soybean mitochondrion 90.93 90.93
Os03t0738400-01 Rice mitochondrion 88.22 89.08
OQU91027 Sorghum mitochondrion 87.64 88.5
TraesCS4D01G068100.1 Wheat mitochondrion 85.71 87.06
TraesCS4B01G069300.1 Wheat mitochondrion 85.71 87.06
TraesCS4A01G246100.1 Wheat mitochondrion 85.71 87.06
PGSC0003DMT400016362 Potato mitochondrion 85.71 85.55
KRH39500 Soybean mitochondrion 83.59 83.75
HORVU4Hr1G011500.1 Barley plasma membrane 85.52 83.11
PGSC0003DMT400011868 Potato cytosol 53.09 58.39
PGSC0003DMT400040717 Potato cytosol 53.09 58.39
PGSC0003DMT400005611 Potato cytosol, plastid 54.83 54.2
PGSC0003DMT400075571 Potato plastid 54.83 53.99
PGSC0003DMT400065000 Potato peroxisome 20.66 51.69
PGSC0003DMT400002684 Potato plastid 19.11 46.92
PGSC0003DMT400061157 Potato cytosol 47.88 41.75
Protein Annotations
KEGG:00260+2.1.2.1KEGG:00460+2.1.2.1KEGG:00630+2.1.2.1KEGG:00670+2.1.2.1KEGG:00680+2.1.2.1MapMan:1.3.5
EntrezGene:102591486Gene3D:3.40.640.10Gene3D:3.90.1150.10ProteinID:CAA81082ProteinID:CAA81082.1GO:GO:0003674
GO:GO:0003676GO:GO:0003723GO:GO:0003824GO:GO:0004372GO:GO:0005488GO:GO:0005575
GO:GO:0005576GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0005739
GO:GO:0005829GO:GO:0005840GO:GO:0005886GO:GO:0006544GO:GO:0006545GO:GO:0006563
GO:GO:0006730GO:GO:0006950GO:GO:0007623GO:GO:0008150GO:GO:0008152GO:GO:0008266
GO:GO:0009058GO:GO:0009409GO:GO:0009416GO:GO:0009507GO:GO:0009534GO:GO:0009536
GO:GO:0009570GO:GO:0009579GO:GO:0009628GO:GO:0009853GO:GO:0009987GO:GO:0010319
GO:GO:0016020GO:GO:0016740GO:GO:0019264GO:GO:0022626GO:GO:0030170GO:GO:0035999
GO:GO:0046686GO:GO:0048046InterPro:IPR015421InterPro:IPR015422HAMAP:MF_00051RefSeq:NP_001275486.1
UniProt:P50433PFAM:PF00464EnsemblPlantsGene:PGSC0003DMG400030612PGSC:PGSC0003DMG400030612EnsemblPlants:PGSC0003DMT400078666PIRSF:PIRSF000412
ScanProsite:PS00096PANTHER:PTHR11680PANTHER:PTHR11680:SF29InterPro:PyrdxlP-dep_TrfaseInterPro:PyrdxlP-dep_Trfase_dom1InterPro:PyrdxlP-dep_Trfase_major
SUPFAM:SSF53383InterPro:Ser_HO-MeTrfaseInterPro:Ser_HO-MeTrfase_PLP_BSUniParc:UPI000012B89BRefSeq:XP_015169067.1EMBL:Z25863
SEG:seg:::::
Description
Serine hydroxymethyltransferase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P50433]
Coordinates
chr2:+:41965337..41971883
Molecular Weight (calculated)
57149.5 Da
IEP (calculated)
8.691
GRAVY (calculated)
-0.293
Length
518 amino acids
Sequence
(BLAST)
001: MAMAIALRRL SATVDKPVKS LYNGGSLYYM SSLPNEAVYD KEKSGVAWPK QLNAPLEVVD PEIADIIEHE KARQWKGLEL IPSENFTSVS VMQAVGSVMT
101: NKYSEGYPGA RYYGGNEYID MAETLCQKRA LEAFRLDPAK WGVNVQPLSG SPANFQVYTA LLKPHERIMA LDLPHGGHLS HGYQTDTKKI SAVSIFFETM
201: PYRLDESTGY IDYDQLEKSA TLFRPKLIVA GASAYARLYD YDRIRKVCNK QKAILLADMA HISGLVAAGV IPSPFDYADV VTTTTHKSLR GPRGAMIFYR
301: KGVKEVNKQG KEVFYDYEDK INQAVFPGLQ GGPHNHTITG LAVALKQATT PEYRAYQEQV LSNSSKFAQA LGEKGYELVS GGTDNHLVLV NMKNKGIDGS
401: RVEKVLEAVH IAANKNTVPG DVSAMVPGGI RMGTPALTSR GFLEEDFVKV ADFFDAAVKI AVKVKAETQG TKLKDFVATL ESSAPIKSEI AKLRHDVEEY
501: AKQFPTIGFE KETMKYKN
Best Arabidopsis Sequence Match ( AT4G37930.1 )
(BLAST)
001: MAMAMALRRL SSSIDKPIRP LIRSTSCYMS SLPSEAVDEK ERSRVTWPKQ LNAPLEEVDP EIADIIEHEK ARQWKGLELI PSENFTSVSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFRLDPEKW GVNVQPLSGS PANFHVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDESTGYI DYDQMEKSAT LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAANVI PSPFDYADVV TTTTHKSLRG PRGAMIFFRK
301: GVKEINKQGK EVLYDFEDKI NQAVFPGLQG GPHNHTITGL AVALKQATTS EYKAYQEQVL SNSAKFAQTL MERGYELVSG GTDNHLVLVN LKPKGIDGSR
401: VEKVLEAVHI ASNKNTVPGD VSAMVPGGIR MGTPALTSRG FVEEDFAKVA EYFDKAVTIA LKVKSEAQGT KLKDFVSAME SSSTIQSEIA KLRHEVEEFA
501: KQFPTIGFEK ETMKYKN
Arabidopsis Description
SHM1Serine hydroxymethyltransferase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ5]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.