Factsheet for PGSC0003DMT400005611

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 2
plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g065490.2.1	Tomato	nucleus, plastid	98.09	98.09
PGSC0003DMT400075571	Potato	plastid	85.88	85.55
GSMUA_Achr10P...	Banana	cytosol	61.45	84.74
VIT_04s0008g00770.t01	Wine grape	plastid	82.44	81.82
PGSC0003DMT400002684	Potato	plastid	29.96	74.41
PGSC0003DMT400011868	Potato	cytosol	51.91	57.75
PGSC0003DMT400040717	Potato	cytosol	51.72	57.54
PGSC0003DMT400078666	Potato	mitochondrion	54.2	54.83
PGSC0003DMT400016362	Potato	mitochondrion	53.82	54.34
PGSC0003DMT400061157	Potato	cytosol	47.52	41.92
PGSC0003DMT400065000	Potato	peroxisome	16.41	41.55

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
EntrezGene:102605665	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372
GO:GO:0005488	GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	InterPro:IPR015421
InterPro:IPR015422	UniProt:M0ZQ61	HAMAP:MF_00051	PFAM:PF00464	EnsemblPlantsGene:PGSC0003DMG400002200	PGSC:PGSC0003DMG400002200
EnsemblPlants:PGSC0003DMT400005611	PIRSF:PIRSF000412	ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF20	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	UniParc:UPI000294BED3
RefSeq:XP_006355324.1	SEG:seg	:	:	:	:

Description

Serine hydroxymethyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400002200]

Coordinates

chr8:-:36735873..36740054

Molecular Weight (calculated)

56951.6 Da

IEP (calculated)

6.974

GRAVY (calculated)

-0.120

Length

524 amino acids

Sequence
(BLAST)

001: MEACCGAGVM SSLQQPLWVK GSAFPSKGVT GINVNSSRVK LCSVKPCRAT PTEWSLITER PSSSAPEGAG SSFEDYGLHE ADPDVRAIID KEKHRQFRSL
101: ELIASENFTS RAVMEAVGSC LTNKYSEGLP GKRYYGGNEY IDELETLCQE RALAAFSLDG KQWGVNVQPL SGSPANFAVY TAVLNPHDRI MGLDLPHGGH
201: LSHGFMTPKR RVSGTSIYFE SMPYRLDEST GILDYEMLEK TANLFRPKLI IAGASAYPRD FDYPCLRKIA DAVGAFLMMD MAHISGLVAA SVLANPFEYC
301: DIVTTTTHKS LRGPRGGMIF FKKDPVLGMD LESAINNAVF PGLQGGPHNH TIGGLAVCLK HAKSPEFKVY QNQVVANCRA LASRLMELGY KLVSGGSDNH
401: LVLVDLRPMG IDGARVEKIL DMASITLNKN SVPGDKSALV PGGIRIGSPA MTTRGFTEKE FVAVADFIHE GVQITLEAKK SVSTTKLQDF MKVVTSPDFN
501: LMDKVLDLQE RVEALTSQYP LPGL

Best Arabidopsis Sequence Match ( AT4G32520.1 )
(BLAST)

001: MQACCGGNSM ASLQQPGRVQ GSVFPPIMPP VTKFSQQLKF NISKPFRSSF LKRNLVSEMR ASSVSLPNVE ISSKEIPFED YGLGEVDPEV RTIITKEKDR
101: QFRSLELIAS ENFTSRAVME AVGSCLTNKY SEGLPGKRYY GGNEYIDQLE TLCQNRALAA FRLDSTKWGV NVQPLSGSPA NFAVYTAILS PHDRIMGLDL
201: PHGGHLSHGF MTAKRRVSGT SIYFESMPYR LDESTGIVDY DMLEKTATLF RPKLIIAGAS AYSRDFDYPR MRKIADSVGA FLMMDMAHIS GLVAASVVAD
301: PFEYCDIVTT TTHKSLRGPR GGMIFFRKDP INGVDLESAV NNAVFPGLQG GPHNHTIGGL AVCLKHAQSP EFKAYQKRVV SNCRALANRL VELGFKLVSG
401: GSDNHLVLVD LRPMGMDGAR VEKILDMASI TLNKNSVPGD KSALVPGGIR IGSPAMTTRG LSEKDFVVVA DFIKEGVEIT MEAKKAAPGS KLQDFNKFVT
501: SPEFPLKERV KSLKERVETF TSRFPIPGV

Arabidopsis Description

SHM3Serine hydroxymethyltransferase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94JQ3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.