Factsheet for PGSC0003DMT400075571

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
plastid 5
mitochondrion 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g095930.1.1	Tomato	plastid	98.1	97.91
PGSC0003DMT400002684	Potato	plastid	35.93	89.57
PGSC0003DMT400005611	Potato	cytosol, plastid	85.55	85.88
GSMUA_Achr10P...	Banana	cytosol	60.46	83.68
VIT_04s0008g00770.t01	Wine grape	plastid	83.65	83.33
PGSC0003DMT400011868	Potato	cytosol	51.33	57.32
PGSC0003DMT400040717	Potato	cytosol	51.14	57.11
PGSC0003DMT400078666	Potato	mitochondrion	53.99	54.83
PGSC0003DMT400016362	Potato	mitochondrion	52.85	53.56
PGSC0003DMT400061157	Potato	cytosol	47.53	42.09
PGSC0003DMT400065000	Potato	peroxisome	15.78	40.1

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
EntrezGene:102596065	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372
GO:GO:0005488	GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	InterPro:IPR015421
InterPro:IPR015422	UniProt:M1CVE4	HAMAP:MF_00051	PFAM:PF00464	EnsemblPlantsGene:PGSC0003DMG400029389	PGSC:PGSC0003DMG400029389
EnsemblPlants:PGSC0003DMT400075571	PIRSF:PIRSF000412	ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF20	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	UniParc:UPI0002961E70
RefSeq:XP_006342507.1	:	:	:	:	:

Description

Serine hydroxymethyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400029389]

Coordinates

chr12:+:57744786..57749676

Molecular Weight (calculated)

56967.8 Da

IEP (calculated)

7.310

GRAVY (calculated)

-0.098

Length

526 amino acids

Sequence
(BLAST)

001: MEACSRAAVM GSSLQQPVWV NGSAFPLKGE VKLNGVKLWS VKPCKASQLE GSLVSGRPPS VSVPIPEMGG AGNNFADYGL GEADPEVRGI IDKEKERQFR
101: SLELIASENF TSRAVMEAVG SCLTNKYSEG LPGKRYYGGN EHIDELEILC QERALAAFNL DGKQWGVNVQ PLSGSPANFE VYTAVLNPHD RIMGLDLPHG
201: GHLSHGFMTP KRRVSGTSIY FESMPYRLDE SSGLVDYDML EKTATLFRPK LIIAGASAYP RDFDYPRMRK IADAVGAFLM MDMAHISGLV AASVVANPFE
301: YCDIVTTTTH KSLRGPRGGM IFFKKDPVLG VDLESAINNA VFPGLQGGPH NHTIGGLAVC LKHAKSPDFK AYQNKVVSNC RALASRLMEL GYKLVSGGTD
401: NHLVLVDLRP LGTDGARVEK ILDMASITLN KNSVAGDKSA LVPGGIRIGS PAMTTRGFSE KEFVTIADLI NEGVQITIEA KSLVSGSKLQ DFMKFVTSPE
501: FPLIDKVLDL QRRVEALTIQ YPLPGL

Best Arabidopsis Sequence Match ( AT4G32520.1 )
(BLAST)

001: MQACCGGNSM ASLQQPGRVQ GSVFPPIMPP VTKFSQQLKF NISKPFRSSF LKRNLVSEMR ASSVSLPNVE ISSKEIPFED YGLGEVDPEV RTIITKEKDR
101: QFRSLELIAS ENFTSRAVME AVGSCLTNKY SEGLPGKRYY GGNEYIDQLE TLCQNRALAA FRLDSTKWGV NVQPLSGSPA NFAVYTAILS PHDRIMGLDL
201: PHGGHLSHGF MTAKRRVSGT SIYFESMPYR LDESTGIVDY DMLEKTATLF RPKLIIAGAS AYSRDFDYPR MRKIADSVGA FLMMDMAHIS GLVAASVVAD
301: PFEYCDIVTT TTHKSLRGPR GGMIFFRKDP INGVDLESAV NNAVFPGLQG GPHNHTIGGL AVCLKHAQSP EFKAYQKRVV SNCRALANRL VELGFKLVSG
401: GSDNHLVLVD LRPMGMDGAR VEKILDMASI TLNKNSVPGD KSALVPGGIR IGSPAMTTRG LSEKDFVVVA DFIKEGVEIT MEAKKAAPGS KLQDFNKFVT
501: SPEFPLKERV KSLKERVETF TSRFPIPGV

Arabidopsis Description

SHM3Serine hydroxymethyltransferase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94JQ3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.