Factsheet for Solyc12g095930.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g067960.2.1
Solyc08g065490.2.1
Solyc12g095930.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32520.1	Solyc06g067960.2.1	AT3G15660.1	21798944
AT4G32520.1	Solyc08g065490.2.1	AT4G32520.1	21798944
AT4G32520.1	Solyc12g095930.1.1	AT4G32520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075571	Potato	plastid	97.91	98.1
Solyc08g065490.2.1	Tomato	nucleus, plastid	86.53	87.02
GSMUA_Achr10P...	Banana	cytosol	60.72	84.21
VIT_04s0008g00770.t01	Wine grape	plastid	84.06	83.9
KRH11116	Soybean	cytosol	37.76	81.56
AT4G32520.1	Thale cress	plastid	79.51	79.21
KRH21130	Soybean	plastid	80.08	78.73
Bra040080.1-P	Field mustard	plastid	77.99	77.69
KRH26204	Soybean	cytosol	28.27	74.87
KRH07754	Soybean	cytosol, nucleus, peroxisome	30.36	74.07
KRH11117	Soybean	plastid	31.5	73.13
CDY39889	Canola	plastid	77.8	70.69
CDY23328	Canola	golgi, plasma membrane	77.42	65.81
Solyc05g053810.2.1	Tomato	nucleus, plastid	51.61	57.75
Solyc12g098490.1.1	Tomato	extracellular, nucleus, unclear	50.85	56.9
Solyc02g091560.2.1	Tomato	plastid	53.89	54.83
Solyc04g076790.2.1	Tomato	nucleus	53.32	54.35
Solyc01g104000.2.1	Tomato	plastid	47.25	41.92

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488
GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	InterPro:IPR015421	InterPro:IPR015422
UniProt:K4DH66	HAMAP:MF_00051	PFAM:PF00464	PIRSF:PIRSF000412	ScanProsite:PS00096	PANTHER:PTHR11680
PANTHER:PTHR11680:SF20	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase
InterPro:Ser_HO-MeTrfase_PLP_BS	EnsemblPlantsGene:Solyc12g095930.1	EnsemblPlants:Solyc12g095930.1.1	UniParc:UPI0002769A0F	SEG:seg	:

Description

Serine hydroxymethyltransferase [Source:UniProtKB/TrEMBL;Acc:K4DH66]

Coordinates

chr12:+:65025082..65028967

Molecular Weight (calculated)

57180.0 Da

IEP (calculated)

7.547

GRAVY (calculated)

-0.098

Length

527 amino acids

Sequence
(BLAST)

001: MEACSRAAVM GSSLQQPVWV KGSAFPLKGE VKLNGVRLWF VKPCKASQLD GSLVSGRPPS SVSVPIPEMG GAGNNFVDYG LGEADPEVRG IIDKEKERQF
101: RSLELIASEN FTSRAVMEAV GSCLTNKYSE GLPGKRYYGG NEYIDELEIL CQERALAAFN LDGKQWGVNV QPLSGSPANF EVYTAVLNPH DRIMGLDLPH
201: GGHLSHGFMT PKRRVSGTSI YFESMPYRLD ESSGLVDYDM LEKTATLFRP KLIIAGASAY PRDFDYPRMR KIADAVGAFL MMDMAHISGL VAASVVANPF
301: EYCDIVTTTT HKSLRGPRGG MIFFKKDPVL GVDLESAINN AVFPGLQGGP HNHTIGGLAV CLKHAKSPDF KAYQNKVVSN CRALASRLTE LGYKLVSGGT
401: DNHLVLVDLR PLGTDGARVE KILDMASITL NKNSVAGDKS ALVPGGIRIG SPAMTTRGFS EKEFVTVADL INEGVQITLE AKNLVSGSKL QDFMKFVTSP
501: EFPLIDKVLD LQRRVEALTI QYPLPGL

Best Arabidopsis Sequence Match ( AT4G32520.1 )
(BLAST)

001: MQACCGGNSM ASLQQPGRVQ GSVFPPIMPP VTKFSQQLKF NISKPFRSSF LKRNLVSEMR ASSVSLPNVE ISSKEIPFED YGLGEVDPEV RTIITKEKDR
101: QFRSLELIAS ENFTSRAVME AVGSCLTNKY SEGLPGKRYY GGNEYIDQLE TLCQNRALAA FRLDSTKWGV NVQPLSGSPA NFAVYTAILS PHDRIMGLDL
201: PHGGHLSHGF MTAKRRVSGT SIYFESMPYR LDESTGIVDY DMLEKTATLF RPKLIIAGAS AYSRDFDYPR MRKIADSVGA FLMMDMAHIS GLVAASVVAD
301: PFEYCDIVTT TTHKSLRGPR GGMIFFRKDP INGVDLESAV NNAVFPGLQG GPHNHTIGGL AVCLKHAQSP EFKAYQKRVV SNCRALANRL VELGFKLVSG
401: GSDNHLVLVD LRPMGMDGAR VEKILDMASI TLNKNSVPGD KSALVPGGIR IGSPAMTTRG LSEKDFVVVA DFIKEGVEIT MEAKKAAPGS KLQDFNKFVT
501: SPEFPLKERV KSLKERVETF TSRFPIPGV

Arabidopsis Description

SHM3Serine hydroxymethyltransferase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94JQ3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.