Factsheet for Solyc04g076790.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 9
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016362	Potato	mitochondrion	98.26	97.88
VIT_18s0001g07960.t01	Wine grape	mitochondrion	87.23	87.4
CDY49212	Canola	mitochondrion	84.91	86.25
KRH16896	Soybean	mitochondrion	84.33	86.0
CDX96315	Canola	mitochondrion	85.3	85.8
Solyc02g091560.2.1	Tomato	plastid	85.49	85.33
GSMUA_Achr7P27360_001	Banana	mitochondrion	84.72	85.21
TraesCS4B01G069300.1	Wheat	mitochondrion	83.95	85.1
TraesCS4A01G246100.1	Wheat	mitochondrion	83.95	85.1
TraesCS4D01G068100.1	Wheat	mitochondrion	83.95	85.1
Os03t0738400-01	Rice	mitochondrion	84.33	84.99
KRH72501	Soybean	mitochondrion	84.33	84.82
Bra016147.1-P	Field mustard	mitochondrion	85.3	84.32
OQU91027	Sorghum	mitochondrion	83.56	84.21
GSMUA_Achr6P23140_001	Banana	mitochondrion	83.95	83.46
CDX72795	Canola	mitochondrion	85.49	83.4
AT5G26780.3	Thale cress	mitochondrion	84.91	82.36
HORVU4Hr1G011500.1	Barley	plasma membrane	84.14	81.61
GSMUA_Achr3P30760_001	Banana	mitochondrion	81.82	80.73
Solyc05g053810.2.1	Tomato	nucleus, plastid	53.77	59.02
Solyc12g098490.1.1	Tomato	extracellular, nucleus, unclear	52.8	57.96
Solyc08g065490.2.1	Tomato	nucleus, plastid	54.55	53.82
Solyc12g095930.1.1	Tomato	plastid	54.35	53.32
Zm00001d009738_P001	Maize	cytosol, plastid	19.73	47.0
Solyc01g104000.2.1	Tomato	plastid	46.81	40.74
Bra003928.1-P	Field mustard	mitochondrion	81.82	38.01
CDX68316	Canola	mitochondrion	85.3	37.69

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488
GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	InterPro:IPR015421	InterPro:IPR015422
UniProt:K4BUB7	HAMAP:MF_00051	PFAM:PF00464	PIRSF:PIRSF000412	ScanProsite:PS00096	PANTHER:PTHR11680
PANTHER:PTHR11680:SF26	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase
InterPro:Ser_HO-MeTrfase_PLP_BS	EnsemblPlantsGene:Solyc04g076790.2	EnsemblPlants:Solyc04g076790.2.1	UniParc:UPI000276604E	SEG:seg	:

Description

Serine hydroxymethyltransferase 2, mitochondrial [Source:Projected from Arabidopsis thaliana (AT5G26780) UniProtKB/Swiss-Prot;Acc:Q94C74]

Coordinates

chr4:+:61670453..61676240

Molecular Weight (calculated)

57249.6 Da

IEP (calculated)

8.347

GRAVY (calculated)

-0.304

Length

517 amino acids

Sequence
(BLAST)

001: MAMALRKISY GSSINLLRPL SNGSSVQYKS SLPNQAVRDR EDPRVTWIKQ LNAPLEEIDP EIADIIEHEK ARQWKGLELI PSENFTSLSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AERLCQKRAL EVFNLDPAKW GVNVQSLSGS PSNFQVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDESTGYI DYEQLEKSAT LFRPKLIVAG ASAYARLYDY ARIRKVCDKQ KAVLLADMAH ISGLVAAGVI PSPFEYADVV TTTTHKSLRG PRGAMIFFRK
301: GVKEINKKGE EVMYDYEDKI NQAVFPGLQG GPHNHTISGL AVALKQVMTP EYKAYQEQVL SNCSKFAESL LAAGYDLVSG GTENHLVLVN LRNKGIDGSR
401: VEKVLESVHI AANKNTVPGD VSAMVPGGIR MGTPALTSRG FVEEDFVKVA EYFDAAVKLA LKVKAETKGT KLKDFVATLS SDSNIQSEVA KLRQDVEDYA
501: KQFPTVGFEK ETMKYKN

Best Arabidopsis Sequence Match ( AT5G26780.1 )
(BLAST)

001: MALALRRLSS SVKKPISLLS SNGGSLRFMS SLSTAAMAES EKSRSSWIKQ LNASLDEIDP EVADIIELEK ARQWKGFELI PSENFTSLSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFQLDPSKW GVNVQSLSGS PANFQVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDENTGYI DYDQLEKSAV LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAAGVI PSPFEYADVV TTTTHKSLRG PRGAMIFFRK
301: GLKEINKQGK EVMYDYEDRI NQAVFPGLQG GPHNHTITGL AVALKQARTP EYKAYQDQVL RNCSKFAETL LAKGYDLVSG GTDNHLVLVN LKNKGIDGSR
401: VEKVLELVHI AANKNTVPGD VSAMVPGGIR MGTPALTSRG FIEEDFAKVA EYFDLAVKIA LKIKAESQGT KLKDFVATMQ SNEKLQSEMS KLREMVEEYA
501: KQFPTIGFEK ETMRYKE

Arabidopsis Description

SHM2serine hydroxymethyltransferase 2 [Source:TAIR;Acc:AT5G26780]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.