Factsheet for Solyc01g104000.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061157	Potato	cytosol	97.47	97.47
KRH26369	Soybean	cytosol	75.76	79.93
VIT_12s0034g02380.t01	Wine grape	cytosol	77.27	79.55
KRH44066	Soybean	plastid	75.08	78.8
TraesCS3B01G417800.1	Wheat	cytosol	62.79	72.43
GSMUA_Achr6P17750_001	Banana	cytosol	65.49	68.01
TraesCS3D01G378700.1	Wheat	cytosol	66.67	67.92
TraesCS3A01G385600.1	Wheat	cytosol	66.67	67.69
HORVU3Hr1G082070.2	Barley	cytosol	66.16	66.95
Zm00001d042661_P001	Maize	cytosol	65.82	66.5
Zm00001d012247_P001	Maize	cytosol	65.49	66.5
Os01t0874900-01	Rice	extracellular	66.67	66.0
EES01843	Sorghum	cytosol	65.82	65.94
GSMUA_Achr10P...	Banana	cytosol	62.29	64.35
Os05t0429000-01	Rice	cytosol	62.96	63.71
Solyc05g053810.2.1	Tomato	nucleus, plastid	49.66	62.63
Solyc12g098490.1.1	Tomato	extracellular, nucleus, unclear	49.49	62.42
GSMUA_Achr10P...	Banana	vacuole	14.98	52.35
Solyc02g091560.2.1	Tomato	plastid	42.26	48.46
Solyc12g095930.1.1	Tomato	plastid	41.92	47.25
Solyc04g076790.2.1	Tomato	nucleus	40.74	46.81
Solyc08g065490.2.1	Tomato	nucleus, plastid	41.25	46.76

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372
GO:GO:0005488	GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	InterPro:IPR015421
InterPro:IPR015422	UniProt:K4B1X5	HAMAP:MF_00051	PFAM:PF00464	ScanProsite:PS00096	ScanProsite:PS00678
PANTHER:PTHR11680	PANTHER:PTHR11680:SF7	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	EnsemblPlantsGene:Solyc01g104000.2	EnsemblPlants:Solyc01g104000.2.1	UniParc:UPI00027685FE	InterPro:WD40_repeat_CS
SEG:seg	:	:	:	:	:

Description

Serine hydroxymethyltransferase [Source:UniProtKB/TrEMBL;Acc:K4B1X5]

Coordinates

chr1:+:92475601..92480986

Molecular Weight (calculated)

65524.8 Da

IEP (calculated)

7.424

GRAVY (calculated)

-0.379

Length

594 amino acids

Sequence
(BLAST)

001: MDLSQSQSSN LSLGFSSHVS PVMSAPNRSH IVDDSIAFQI DSRVKDQSYP GTPVPLQLMD KQTKENGKEG GESADEERDV EEFRILGHSM CIKRKRDTDA
101: SSSSSSSKSF KVTSSNENLL GLESRRNAVR AWGNQGLQVA DPDIFEIMEK EKQRQYKGIE LIASENFVCK AVMEALGSHL TNKYSEGASG ARYYGGNQFI
201: DEIETLCCKR ALAAFGLDPE NWGVNVQPYS CTSANFAVYT GLLLPGDRIM GLDTPSGGNT SHGYYLPNGR RVSGASIFFE SLSYKVDPQT GYVDFDKLEE
301: RALDFRPKIL ICGGSSYPRE WDYAKFRQIA DKCGAVLLCD MAQISGLIAA KECASPFDYC DIVTSTTHKS LRGPRGGIIF YRKGSKPRKR GLLLNQGDGS
401: DKYDFEEKIN FAVFPALQGG PHNNHIAALA IALKQVATPD YRAYMQQVKR NAQALAAALL RRNCRLVTGG TDNHMILWDL RNLGLTGKNF EKVCELCHIT
501: LNKVMVFDDN GSITPGGVRI GTPAMTSRGC IENDFDTMAD FLLKAAQITN SIQREHGKLA KGFLKGLENN KDVIELRTRV ENFATLFAMP GFEV

Best Arabidopsis Sequence Match ( AT1G36370.1 )
(BLAST)

001: MDLSRSQTNF QLGFGCSHAS MTPTPTPRAP IADDSINLQV DQSFRSLPTT FSPIPLQLLE QKAEKTTTVD EPKKDGGGGG DQKEDEHFRI LGHHMCLKRQ
101: RDCPLLLTQS KHPKRSSIGD SDLESRRAAV RAWGDQPIHL ADPDIHELME KEKQRQVRGI ELIASENFVC RAVMEALGSH LTNKYSEGMP GARYYTGNQY
201: IDQIENLCIE RALTAFGLES DKWGVNVQPY SCTSANFAVY TGLLLPGERI MGLDSPSGGH MSHGYCTPGG KKISAASIFF ESFPYKVNPQ TGYIDYDKLE
301: DKALDYRPKI LICGGSSYPR DWDFARVRQI ADKCGAVLMC DMAHISGLVA TKECSNPFDH CDIVTSTTHK GLRGPRGGII FYRRGPKIRK QGHHSSHCDT
401: STHYDLEEKI NFAVFPSLQG GPHNNHIAAL AIALKQVATP EYKAYIQQMK KNAQALAAAL LRRKCRLVTG GTDNHLLLWD LTPMGLTGKV YEKVCEMCHI
501: TLNKTAIFGD NGTISPGGVR IGTPAMTTRG CIESDFETMA DFLIKAAQIT SALQREHGKS HKEFVKSLCT NKDIAELRNR VEAFALQYEM PASLIRIE

Arabidopsis Description

SHM7Serine hydroxymethyltransferase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q84WV0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.