Factsheet for Solyc05g053810.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

cytosol 3
mitochondrion 3
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976
plastid: 26371478
unclear: 26455813
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040717	Potato	cytosol	98.94	98.94
Solyc12g098490.1.1	Tomato	extracellular, nucleus, unclear	93.84	93.84
VIT_05s0029g00310.t01	Wine grape	cytosol	92.99	92.99
CDY69223	Canola	cytosol	90.23	90.23
CDY01173	Canola	cytosol	83.01	90.09
CDY50421	Canola	cytosol	83.01	90.09
Bra032749.1-P	Field mustard	cytosol	90.02	90.02
Bra014001.1-P	Field mustard	cytosol	82.8	89.86
CDY47310	Canola	cytosol	82.8	89.86
KRH58850	Soybean	cytosol	91.08	89.56
AT4G13930.1	Thale cress	cytosol	89.38	89.38
GSMUA_Achr8P00310_001	Banana	cytosol	47.77	89.29
GSMUA_Achr9P01620_001	Banana	cytosol	83.01	89.27
GSMUA_Achr6P06520_001	Banana	cytosol	84.29	89.21
GSMUA_Achr9P07310_001	Banana	cytosol	74.95	87.16
Zm00001d040457_P001	Maize	mitochondrion	17.83	86.6
EES08452	Sorghum	cytosol	85.56	85.56
Os11t0455800-01	Rice	plasma membrane	84.93	84.93
TraesCS2D01G493600.1	Wheat	cytosol	84.93	84.93
TraesCS2A01G493700.1	Wheat	plastid	84.93	84.93
TraesCS2B01G521700.1	Wheat	cytosol	84.71	84.71
AT4G13890.1	Thale cress	cytosol	78.98	79.15
Zm00001d049234_P001	Maize	plastid	85.77	76.81
KRH42751	Soybean	endoplasmic reticulum, nucleus	93.21	76.75
HORVU2Hr1G110110.2	Barley	mitochondrion, plastid	84.5	72.23
Solyc04g076790.2.1	Tomato	nucleus	59.02	53.77
Solyc02g091560.2.1	Tomato	plastid	59.02	53.67
Solyc08g065490.2.1	Tomato	nucleus, plastid	57.96	52.1
Solyc12g095930.1.1	Tomato	plastid	57.75	51.61
Solyc01g104000.2.1	Tomato	plastid	62.63	49.66

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372
GO:GO:0005488	GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	InterPro:IPR015421
InterPro:IPR015422	UniProt:K4C261	HAMAP:MF_00051	PFAM:PF00464	PIRSF:PIRSF000412	ScanProsite:PS00096
PANTHER:PTHR11680	PANTHER:PTHR11680:SF11	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	EnsemblPlantsGene:Solyc05g053810.2	EnsemblPlants:Solyc05g053810.2.1	UniParc:UPI0002766704	SEG:seg

Description

Serine hydroxymethyltransferase [Source:UniProtKB/TrEMBL;Acc:K4C261]

Coordinates

chr5:-:63847582..63852098

Molecular Weight (calculated)

52062.1 Da

IEP (calculated)

7.086

GRAVY (calculated)

-0.342

Length

471 amino acids

Sequence
(BLAST)

001: MDPVTVWGNE PLSTVDPEIH DLIEKEKRRQ CRGIELIASE NFTSFAVIEA LGSALTNKYS EGIPGNRYYG GNEYIDQIEN LTRSRALEAF HLDPTKWGVN
101: VQPYSGSPAN FAAYTAVLNP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VNSTNGYIDY DRLEEKALDF RPKLIICGGS AYPRDWDYKR
201: FREVADKCGA LLLCDMAHIS GLVAAQEAAN PFEYCDLVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPED AVYDFEDKIN FAVFPSLQGG PHNHQIGALA
301: VALKQAATPG FKAYAKQVKA NAVALGDYLM SKGYKLVTGG TENHLVLWDL RPLGLTGNKV EKLCDLCNIT VNKNAVFGDS SALAPGGVRI GTPAMTSRGL
401: VEKDFEQIAE FLHRAVTITL NIQKEFGKLL KDFNKGLVNN KEIEELKVDV EKFSASFDMP GFKMSEMKYQ D

Best Arabidopsis Sequence Match ( AT4G13930.1 )
(BLAST)

001: MEPVSSWGNT SLVSVDPEIH DLIEKEKRRQ CRGIELIASE NFTSFAVIEA LGSALTNKYS EGIPGNRYYG GNEFIDEIEN LCRSRALEAF HCDPAAWGVN
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VNFTTGYIDY DKLEEKALDF RPKLLICGGS AYPRDWDYAR
201: FRAIADKVGA LLLCDMAHIS GLVAAQEAAN PFEYCDVVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPEG AVYDFEDKIN FAVFPALQGG PHNHQIGALA
301: VALKQANTPG FKVYAKQVKA NAVALGNYLM SKGYQIVTNG TENHLVLWDL RPLGLTGNKV EKLCDLCSIT LNKNAVFGDS SALAPGGVRI GAPAMTSRGL
401: VEKDFEQIGE FLSRAVTLTL DIQKTYGKLL KDFNKGLVNN KDLDQLKADV EKFSASYEMP GFLMSEMKYK D

Arabidopsis Description

SHM4Serine hydroxymethyltransferase 4 [Source:UniProtKB/Swiss-Prot;Acc:O23254]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.