Factsheet for VIT_05s0029g00310.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0001g07370.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G13930.1	VIT_18s0001g07370.t01	AT4G24560.1	23232097

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g053810.2.1	Tomato	nucleus, plastid	92.99	92.99
PGSC0003DMT400040717	Potato	cytosol	91.93	91.93
GSMUA_Achr6P06520_001	Banana	cytosol	86.2	91.24
GSMUA_Achr9P01620_001	Banana	cytosol	84.71	91.1
AT4G13930.1	Thale cress	cytosol	90.66	90.66
PGSC0003DMT400011868	Potato	cytosol	90.66	90.66
GSMUA_Achr8P00310_001	Banana	cytosol	48.2	90.08
Solyc12g098490.1.1	Tomato	extracellular, nucleus, unclear	90.02	90.02
CDY69223	Canola	cytosol	89.38	89.38
KRH58850	Soybean	cytosol	90.87	89.35
Bra032749.1-P	Field mustard	cytosol	89.17	89.17
CDY01173	Canola	cytosol	81.95	88.94
CDY50421	Canola	cytosol	81.95	88.94
GSMUA_Achr9P07310_001	Banana	cytosol	76.43	88.89
CDY47310	Canola	cytosol	81.74	88.71
Bra014001.1-P	Field mustard	cytosol	81.74	88.71
Zm00001d040457_P001	Maize	mitochondrion	18.05	87.63
EES08452	Sorghum	cytosol	86.62	86.62
TraesCS2A01G493700.1	Wheat	plastid	85.35	85.35
TraesCS2D01G493600.1	Wheat	cytosol	85.35	85.35
Os11t0455800-01	Rice	plasma membrane	85.35	85.35
TraesCS2B01G521700.1	Wheat	cytosol	85.14	85.14
AT4G13890.1	Thale cress	cytosol	78.98	79.15
Zm00001d049234_P001	Maize	plastid	86.84	77.76
KRH42751	Soybean	endoplasmic reticulum, nucleus	92.14	75.87
HORVU2Hr1G110110.2	Barley	mitochondrion, plastid	85.14	72.78
VIT_12s0034g02380.t01	Wine grape	cytosol	65.61	53.55
VIT_18s0001g07960.t01	Wine grape	mitochondrion	58.6	53.49
VIT_00s0211g00090.t01	Wine grape	cytosol	29.51	53.46
VIT_00s0211g00120.t01	Wine grape	mitochondrion	58.6	53.28
VIT_18s0001g04340.t01	Wine grape	cytosol, nucleus, plastid	64.97	52.4
VIT_00s0211g00070.t01	Wine grape	mitochondrion	56.69	51.54
VIT_04s0008g00770.t01	Wine grape	plastid	57.54	51.33
VIT_00s0211g00080.t01	Wine grape	cytosol	19.32	50.0
VIT_00s0211g00100.t01	Wine grape	mitochondrion	26.11	49.6
VIT_00s0211g00160.t01	Wine grape	mitochondrion	23.57	47.03

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
EntrezGene:100248779	wikigene:100248779	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	ProteinID:CCB44316
ProteinID:CCB44316.1	UniProt:F6GWF3	EMBL:FN594958	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372
GO:GO:0005488	GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	InterPro:IPR015421
InterPro:IPR015422	EntrezGene:LOC100248779	wikigene:LOC100248779	HAMAP:MF_00051	PFAM:PF00464	PIRSF:PIRSF000412
ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF11	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major
SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	TIGR:TC51904	TIGR:TC57832	UniParc:UPI00019834D0
ArrayExpress:VIT_05s0029g00310	EnsemblPlantsGene:VIT_05s0029g00310	EnsemblPlants:VIT_05s0029g00310.t01	unigene:Vvi.8061	RefSeq:XP_002266276	RefSeq:XP_002266276.1
SEG:seg	:	:	:	:	:

Description

Serine hydroxymethyltransferase [Source:UniProtKB/TrEMBL;Acc:F6GWF3]

Coordinates

chr5:-:14756167..14759506

Molecular Weight (calculated)

51909.0 Da

IEP (calculated)

7.534

GRAVY (calculated)

-0.286

Length

471 amino acids

Sequence
(BLAST)

001: MDPVSEWGNS SLLTVDPEIH DLIEKEKRRQ CRGIELIASE NFTSFAVIEA LGSALTNKYS EGMPGNRYYG GNEFIDEIEN LCRSRALQAF HCDPSKWGVN
101: VQPYSGSPAN FAAYTAILNP HDRIMGLDLP SGGHLTHGYY TSSGKKISAT SIYFESLPYK VSSTTGYIDY DRLEEKALDF RPKLIICGGS AYPRDWDYAR
201: FRSIADKCGA LLLCDMAHIS GLVAAQEAAN PFEYCDIVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPED AVYDFEDKVN FAVFPSLQGG PHNHQIAALA
301: VALKQAMVPG FKAYAKQVKA NAVALGNYLM SKGYKLVTGG TENHLVLWDL RPLGLTGNKV EKLCDLCNIT VNKNAVFGDS SALAPGGVRI GAPAMTSRGL
401: VEKDFEQIAE FLHRAVTITL KIQKEHGKLL KDFNKGLVNN KDIEELKVDV EKFSASFEMP GFSVSEMKYK D

Best Arabidopsis Sequence Match ( AT4G13930.1 )
(BLAST)

001: MEPVSSWGNT SLVSVDPEIH DLIEKEKRRQ CRGIELIASE NFTSFAVIEA LGSALTNKYS EGIPGNRYYG GNEFIDEIEN LCRSRALEAF HCDPAAWGVN
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VNFTTGYIDY DKLEEKALDF RPKLLICGGS AYPRDWDYAR
201: FRAIADKVGA LLLCDMAHIS GLVAAQEAAN PFEYCDVVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPEG AVYDFEDKIN FAVFPALQGG PHNHQIGALA
301: VALKQANTPG FKVYAKQVKA NAVALGNYLM SKGYQIVTNG TENHLVLWDL RPLGLTGNKV EKLCDLCSIT LNKNAVFGDS SALAPGGVRI GAPAMTSRGL
401: VEKDFEQIGE FLSRAVTLTL DIQKTYGKLL KDFNKGLVNN KDLDQLKADV EKFSASYEMP GFLMSEMKYK D

Arabidopsis Description

SHM4Serine hydroxymethyltransferase 4 [Source:UniProtKB/Swiss-Prot;Acc:O23254]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.