Factsheet for VIT_00s0211g00160.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0211g00100.t01	Wine grape	mitochondrion	88.98	84.68
VIT_00s0211g00120.t01	Wine grape	mitochondrion	92.37	42.08
VIT_00s0211g00070.t01	Wine grape	mitochondrion	88.56	40.35
Zm00001d009738_P001	Maize	cytosol, plastid	36.44	39.63
VIT_18s0001g07960.t01	Wine grape	mitochondrion	82.63	37.79
PGSC0003DMT400065000	Potato	peroxisome	28.39	32.37
VIT_04s0008g00770.t01	Wine grape	plastid	53.39	23.86
VIT_05s0029g00310.t01	Wine grape	cytosol	47.03	23.57
VIT_12s0034g02380.t01	Wine grape	cytosol	46.19	18.89
VIT_18s0001g04340.t01	Wine grape	cytosol, nucleus, plastid	46.61	18.84
VIT_00s0211g00080.t01	Wine grape	cytosol	3.81	4.95
VIT_00s0211g00090.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

EntrezGene:100854244	wikigene:100854244	Gene3D:3.40.640.10	MapMan:35.1	ProteinID:CBI25706	ProteinID:CBI25706.3
UniProt:D7T5C3	EMBL:FN595522	GO:GO:0003674	GO:GO:0003824	InterPro:IPR015421	EntrezGene:LOC100854244
wikigene:LOC100854244	PFAM:PF00464	PANTHER:PTHR11680	PANTHER:PTHR11680:SF29	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major
SUPFAM:SSF53383	UniParc:UPI0001BE2C55	ArrayExpress:VIT_00s0211g00160	EnsemblPlantsGene:VIT_00s0211g00160	EnsemblPlants:VIT_00s0211g00160.t01	RefSeq:XP_010646398.1

Description

No Description!

Coordinates

chrUn:-:12990213..12992662

Molecular Weight (calculated)

26467.5 Da

IEP (calculated)

6.685

GRAVY (calculated)

-0.264

Length

236 amino acids

Sequence
(BLAST)

001: MAMAMALRRL SSSVDKPVRS VFNGGSIYYM ASLPNEAVYE KEKSRVTWPK QLNAPLGVVD PEIADIIELE KARQWKGLEL IPSENFTSVS VMQAVGSIMT
101: NKYSEGYPGA RYYGGNEYID MAESLCQKRA LEAFRLDPAK WGVNVQSLSG SPANFQVYTA LLKAHERIMA LDLPHGGHLS HGYQTDTKKI SAVSIFFETM
201: PYRLNESTGY IDYDQVTFHF AYSRSSFSSI PEQIFT

Best Arabidopsis Sequence Match ( AT4G37930.1 )
(BLAST)

001: MAMAMALRRL SSSIDKPIRP LIRSTSCYMS SLPSEAVDEK ERSRVTWPKQ LNAPLEEVDP EIADIIEHEK ARQWKGLELI PSENFTSVSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFRLDPEKW GVNVQPLSGS PANFHVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDESTGYI DYDQMEKSAT LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAANVI PSPFDYADVV TTTTHKSLRG PRGAMIFFRK
301: GVKEINKQGK EVLYDFEDKI NQAVFPGLQG GPHNHTITGL AVALKQATTS EYKAYQEQVL SNSAKFAQTL MERGYELVSG GTDNHLVLVN LKPKGIDGSR
401: VEKVLEAVHI ASNKNTVPGD VSAMVPGGIR MGTPALTSRG FVEEDFAKVA EYFDKAVTIA LKVKSEAQGT KLKDFVSAME SSSTIQSEIA KLRHEVEEFA
501: KQFPTIGFEK ETMKYKN

Arabidopsis Description

SHM1Serine hydroxymethyltransferase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.