Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 3
- peroxisome 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s0211g00160.t01 | Wine grape | mitochondrion | 32.37 | 28.39 |
| PGSC0003DMT400002684 | Potato | plastid | 23.67 | 23.22 |
| PGSC0003DMT400016362 | Potato | mitochondrion | 53.62 | 21.39 |
| Zm00001d009738_P001 | Maize | cytosol, plastid | 22.22 | 21.2 |
| PGSC0003DMT400078666 | Potato | mitochondrion | 51.69 | 20.66 |
| PGSC0003DMT400040717 | Potato | cytosol | 38.65 | 16.99 |
| PGSC0003DMT400011868 | Potato | cytosol | 37.68 | 16.56 |
| PGSC0003DMT400005611 | Potato | cytosol, plastid | 41.55 | 16.41 |
| PGSC0003DMT400075571 | Potato | plastid | 40.1 | 15.78 |
| PGSC0003DMT400061157 | Potato | cytosol | 37.2 | 12.96 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400065000 | EnsemblPlantsGene:PGSC0003DMG400025248 | EntrezGene:107058768 | Gene3D:3.40.640.10 | GO:GO:0003674 | GO:GO:0003824 |
| InterPro:IPR015421 | InterPro:PyrdxlP-dep_Trfase | InterPro:PyrdxlP-dep_Trfase_major | PANTHER:PTHR11680 | PANTHER:PTHR11680:SF26 | PFAM:PF00464 |
| PGSC:PGSC0003DMG400025248 | RefSeq:XP_015160384.1 | SUPFAM:SSF53383 | UniParc:UPI000295C034 | UniProt:M1CD88 | MapMan:35.1 |
Description
Serine hydroxymethyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400025248]
Coordinates
chr1:-:66293455..66296235
Molecular Weight (calculated)
23574.1 Da
IEP (calculated)
8.360
GRAVY (calculated)
0.337
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MWIKQRNSLF EDIGSNSVDI IELEKARQWN GHKLIPSENF TSLSVMLVVR SILPIIFNER CRGTRYYGGD KYIDMTAKLC EENVLEVFKI DPATWRINVQ
101: LLTRSLINFQ VSIALLESHE KCATFFRPKL IVAIASVYAR LCDYACIHKI GNTQLEIIFL VDMAHINGLA VAKVIFPFKY AIPVACATQF MGGQVYVFIV
201: LDKSLFA
101: LLTRSLINFQ VSIALLESHE KCATFFRPKL IVAIASVYAR LCDYACIHKI GNTQLEIIFL VDMAHINGLA VAKVIFPFKY AIPVACATQF MGGQVYVFIV
201: LDKSLFA
001: MAMAMALRRL SSSIDKPIRP LIRSTSCYMS SLPSEAVDEK ERSRVTWPKQ LNAPLEEVDP EIADIIEHEK ARQWKGLELI PSENFTSVSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFRLDPEKW GVNVQPLSGS PANFHVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDESTGYI DYDQMEKSAT LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAANVI PSPFDYADVV TTTTHKSLRG PRGAMIFFRK
301: GVKEINKQGK EVLYDFEDKI NQAVFPGLQG GPHNHTITGL AVALKQATTS EYKAYQEQVL SNSAKFAQTL MERGYELVSG GTDNHLVLVN LKPKGIDGSR
401: VEKVLEAVHI ASNKNTVPGD VSAMVPGGIR MGTPALTSRG FVEEDFAKVA EYFDKAVTIA LKVKSEAQGT KLKDFVSAME SSSTIQSEIA KLRHEVEEFA
501: KQFPTIGFEK ETMKYKN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFRLDPEKW GVNVQPLSGS PANFHVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDESTGYI DYDQMEKSAT LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAANVI PSPFDYADVV TTTTHKSLRG PRGAMIFFRK
301: GVKEINKQGK EVLYDFEDKI NQAVFPGLQG GPHNHTITGL AVALKQATTS EYKAYQEQVL SNSAKFAQTL MERGYELVSG GTDNHLVLVN LKPKGIDGSR
401: VEKVLEAVHI ASNKNTVPGD VSAMVPGGIR MGTPALTSRG FVEEDFAKVA EYFDKAVTIA LKVKSEAQGT KLKDFVSAME SSSTIQSEIA KLRHEVEEFA
501: KQFPTIGFEK ETMKYKN
Arabidopsis Description
SHM1Serine hydroxymethyltransferase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ5]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.